search

vgteam / gssw

efficient alignment of strings to partially ordered string graphs
33 stars 17 forks source link

Just score it #22

Closed ekg closed 7 years ago

ekg commented 7 years ago

Enables score-only operation of GSSW.

In theory this will help us keep the local alignment in the higher caches of the CPU and RAM, which in turn should speed up its operation.