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vgteam
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libbdsg
Optimized sequence graph implementations for graph genomics
MIT License
30
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6
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upgrade libbdsg version from pip installation
#203
Plogeur
opened
1 week ago
1
Actually expose the PackedGraph batch path destroy function
#202
jeizenga
closed
1 month ago
0
Implement batch delete functions for paths
#201
jeizenga
closed
1 month ago
0
Odds and ends for reference path overlay
#200
jeizenga
closed
1 month ago
0
A simpler overlay to speed up reference path queries
#199
jeizenga
closed
2 months ago
1
Bump submodule to latest sdsl commit
#198
rlorigro
closed
1 month ago
0
Build fails on Ubuntu 24
#197
rlorigro
opened
3 months ago
0
Make overlay construction less parallel and lookup hopefully faster
#196
adamnovak
closed
1 month ago
0
Zipcode support
#195
xchang1
closed
6 months ago
0
When I use python bdsg to deal with a packedgraph, I found a question.
#194
pioneer-pi
opened
8 months ago
3
Prevent uninitialized memory read during PackedPathPositionOverlay construction
#193
jeizenga
closed
9 months ago
0
Add missing jansson link in makefile
#192
jeizenga
closed
9 months ago
0
Enabled the creation of empty handles for PackedGraphs
#191
Robin-Rounthwaite
closed
10 months ago
0
Update net_handle_t bindings to include equality and hash
#190
xchang1
opened
12 months ago
1
Fix PackedGraph edge counting
#189
jeizenga
closed
1 year ago
0
PackedGraph::get_edge_count() doesn't work
#188
glennhickey
closed
1 year ago
2
Add extra wiggle room for bit width
#187
xchang1
closed
1 year ago
0
Predict bit width more accurately
#186
xchang1
closed
1 year ago
0
Long Read Giraffe
#185
adamnovak
closed
6 months ago
0
Map read-only when needed
#184
adamnovak
closed
1 year ago
0
add typedef for ReferencePathVectorizableOverlayHelper
#183
glennhickey
closed
1 year ago
0
Allow preloading the distance index from disk
#182
adamnovak
closed
1 year ago
1
Python bindings install with pip raises legacy-install-failure
#181
Tharos-ux
closed
7 months ago
1
Add a maximum number of warnings about hitting the snarl size limit
#180
jeizenga
closed
1 year ago
0
Deal with Mac not really having libdl anymore
#179
adamnovak
closed
1 year ago
0
Long distances
#178
xchang1
closed
1 year ago
0
Commit missing bindings file
#177
adamnovak
closed
1 year ago
0
Bump certifi from 2020.6.20 to 2022.12.7 in /bdsg/docs
#176
dependabot[bot]
opened
1 year ago
0
Remove ODGI
#175
adamnovak
closed
1 year ago
0
Parallelize step-to-path cache in ref overlay
#174
glennhickey
closed
1 year ago
0
Add step->path cache to the reference overlay
#173
glennhickey
closed
1 year ago
0
Deconstruction is still oddly slow with PackedReferencePathOverlay
#172
adamnovak
closed
1 year ago
4
Better jansson
#171
adamnovak
closed
1 year ago
0
Add and pass tests for multipel indexes
#170
adamnovak
closed
1 year ago
0
Add overlay that accelerates path lookup on nodes
#169
adamnovak
closed
1 year ago
3
Speed up finding reference paths on a handle: Make PathPositionOverlay also implement its own for_each_step_on_handle_impl?
#168
adamnovak
closed
1 year ago
2
Add some error checking to serialization/deserialization
#167
adamnovak
closed
1 year ago
1
Distance index error checking
#166
adamnovak
closed
1 year ago
1
Distance index
#165
xchang1
closed
1 year ago
2
Unstatic get net handle
#164
xchang1
closed
2 years ago
0
Update distance index
#163
xchang1
closed
2 years ago
0
Docs don't seem to properly list C++ methods anymore
#161
adamnovak
opened
2 years ago
0
Docs/Python bindings broke because of SnarlDistanceIndex
#160
adamnovak
opened
2 years ago
1
Serialize distance index properly
#159
xchang1
closed
2 years ago
0
Overlays don't work well with haplotype paths
#158
adamnovak
opened
2 years ago
0
Overlays don't expose path metadata methods
#157
adamnovak
opened
2 years ago
0
Distance index
#156
xchang1
closed
2 years ago
0
Update to the newest libhandlegraph
#155
jeizenga
closed
2 years ago
0
Fix PackedPositionOverlay multithreaded build
#154
adamnovak
closed
2 years ago
0
Path metadata API implementation
#153
adamnovak
closed
2 years ago
1
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