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vgteam / long-read-giraffe-experiments

Experimental materials for testing the long-read mapping abilities of vg giraffe
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Compare R9 and R10 performance with R10 preset #20

Closed adamnovak closed 4 months ago

adamnovak commented 4 months ago

I have a comparison for 10k reads: https://ucsc-gi.slack.com/archives/CJ2EHEH1A/p1715981022847849

I'm running one for 1M reads.

adamnovak commented 4 months ago

I ran the 1M reads also: https://ucsc-gi.slack.com/archives/CJ2EHEH1A/p1716212553322289

I think MAPQ problems along the lines of #17 might be a real problem here.