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vgteam / long-read-giraffe-experiments

Experimental materials for testing the long-read mapping abilities of vg giraffe
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Optimize minimizer count extra parameter #24

Closed adamnovak closed 4 months ago

adamnovak commented 5 months ago

Xian will run a parameter search and then I will look to see if the new parameters make sense: the chaining gap allowedness heuristics and lookback limits need to make sense with the minimizer density from the windowing parameters.