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vgteam / long-read-giraffe-experiments

Experimental materials for testing the long-read mapping abilities of vg giraffe
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Change from "HiFi" sample to real HG002 HiFi reads #28

Closed adamnovak closed 5 months ago

adamnovak commented 5 months ago

Once I get them, @jltsiren needs them.

adamnovak commented 5 months ago

OK, per Julian's advice I've collected a bunch of individual files from Mobin's data set:

"/private/groups/patenlab/masri/hprc/polishing/HG002/reads/HiFi_DC_v1.2/downsampled_40x/m64011_190714_120746.dc.q20.fastq.gz",
"/private/groups/patenlab/masri/hprc/polishing/HG002/reads/HiFi_DC_v1.2/downsampled_40x/m64011_190830_220126.dc.q20.fastq.gz",
"/private/groups/patenlab/masri/hprc/polishing/HG002/reads/HiFi_DC_v1.2/downsampled_40x/m64011_190901_095311.dc.q20.fastq.gz",
"/private/groups/patenlab/masri/hprc/polishing/HG002/reads/HiFi_DC_v1.2/downsampled_40x/m64012_190920_173625.dc.q20.fastq.gz"

And combined them into:

/private/groups/patenlab/anovak/projects/hprc/lr-giraffe/reads/real/hifi/HG002/HiFi_DC_v1.2_HG002_combined_unshuffled.fq.gz

This is a multi-member GZIP file.