Profile and optimize parameters for R10 to get good speed without reducing accuracy or increasing unaligned bases

vgteam / long-read-giraffe-experiments

Experimental materials for testing the long-read mapping abilities of vg giraffe

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Profile and optimize parameters for R10 to get good speed without reducing accuracy or increasing unaligned bases #36

Closed adamnovak closed 3 months ago

adamnovak commented 3 months ago

I did the profiling, but it just blamed most of the time on the align step, and I wasn't able to find obviously better parameters for R10 than what's already in vg 02e6a0029cf79fd8ded07d89c9b474d8580f1fba as the default.