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vgteam / long-read-giraffe-experiments

Experimental materials for testing the long-read mapping abilities of vg giraffe
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Improve MAPQs on HiFi reads #46

Open adamnovak opened 4 months ago

adamnovak commented 4 months ago

In https://ucsc-gi.slack.com/archives/CJ2EHEH1A/p1720038830195099?thread_ts=1719905671.084099&cid=CJ2EHEH1A, @benedictpaten notes that we could adjust out MAPQs to be "more confident" and "to the right".

adamnovak commented 1 month ago

I think we're basically OK with the MAPQs? They could always be better.