Closed adamnovak closed 1 year ago
This should help with #294.
To make this, I took one of the existing GAMs, converted to JSON, set the fields from the schema with jq, and converted back.
vg view -aj cactus0_10.sorted.gam | jq '.sample_name="Sample001" | .read_group="SomeRandomReadGroup"' | vg view -JGa - >cactus_metadata.gam vg gamsort -i cactus_metadata.sorted.gam.gai cactus_metadata.gam > cactus_metadata.sorted.gam
This should help with #294.
To make this, I took one of the existing GAMs, converted to JSON, set the fields from the schema with jq, and converted back.