With multiple GAM files (?), when reads skip over multiple nodes, their vertical order when skipping the first node gets lost when skipping subsequent nodes, and they do this absurd complete shuffle.
The reads should flow through coherently.
I observed this in chr6:82003584-82004084 from Rajeeva's data set he sent over for debugging looping reads.
With multiple GAM files (?), when reads skip over multiple nodes, their vertical order when skipping the first node gets lost when skipping subsequent nodes, and they do this absurd complete shuffle.
The reads should flow through coherently.
I observed this in
chr6:82003584-82004084from Rajeeva's data set he sent over for debugging looping reads.