search

vgteam / sv-genotyping-paper

MIT License
31 stars 6 forks source link

Code for Delly/SVTyper/BayesTyper, SV evaluation and cleanup #4

Closed jmonlong closed 5 years ago

jmonlong commented 5 years ago

I added the commands used to run the other methods (except SMRT-SV v2) and the pipeline to run the SV evaluation.

I also tried to clean up the toil-vg part. I added some important chunks in the README, like the VCF preparation. I also removed the evaluation commands because I added a dedicated folder with the evaluation across all datasets.

There are still a few things missing, I'll create an issue.