This adds the Giraffe mapper and its required indexes to toil-vg.
Now you can ask for --distance_index and --minimizer_index with toil-vg construct or toil-vg index, and you can use --mappers gaffe to ask for Giraffe in toil-vg mapeval. The old --multipath and --multipath-only options still work, but now you should use --mappers [gaffe] [mpmap] [map] instead.
This adds the Giraffe mapper and its required indexes to toil-vg.
Now you can ask for
--distance_indexand--minimizer_indexwithtoil-vg constructortoil-vg index, and you can use--mappers gaffeto ask for Giraffe intoil-vg mapeval. The old--multipathand--multipath-onlyoptions still work, but now you should use--mappers [gaffe] [mpmap] [map]instead.