fix toil-vg map's giraffe support

vgteam / toil-vg

Distributed and cloud computing framework for vg

Apache License 2.0

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fix toil-vg map's giraffe support #841

Closed glennhickey closed 3 years ago

glennhickey commented 3 years ago

It looks like the addition of the required-but-never-set --graph_gbwt_index option broke giraffe support in toil-vg map. This PR should fix that. It also adds a giraffe test.

(stacks on #840)