msga Travis Mac tests sometimes fail

vgteam / vg

tools for working with genome variation graphs

https://biostars.org/tag/vg/

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msga Travis Mac tests sometimes fail #1490

Open adamnovak opened 6 years ago

adamnovak commented 6 years ago

See https://travis-ci.org/vgteam/vg/jobs/348556292

t/16_vg_msga.t ....... 
1..13
not ok 1 - graph for GRCh38 HLA-V is unaffected by the number of alignment threads
#          got: 'd41d8cd98f00b204e9800998ecf8427e'
#     expected: '16e56f0090b310d2b1479d49cf790324'

This may be Jordan's new multithreading code?

adamnovak commented 6 years ago

Fixing this probably requires backing out #1485 which included https://github.com/vgteam/vg/commit/9ac212842ed503b45fafec21d92ad3b3be60d286 which disabled the offending test.

adamnovak commented 6 years ago

We have some dumping code in the MSGA tests now that can be uncommented to try and debug this. But someone with a Mac (i.e. not Erik) has to actually do it.