search

vgteam / vg

tools for working with genome variation graphs
https://biostars.org/tag/vg/
Other
1.1k stars 194 forks source link

Can vg giraffe align long reads by adjusting parameters like vg map? #3691

Closed ZHU-XU-xmu closed 2 years ago

ZHU-XU-xmu commented 2 years ago

Thanks to vgteams for developing such a useful tool. I want to map nanopore reads to a pangenome graph ,which can do by vg map. Is it possible using giraffe to map nanopore reads by adjusting parameters? Thanks very much.

jeizenga commented 2 years ago

That's something we're actively working on, but our work is not yet complete. Currently, the state-of-the-art tool for mapping long reads onto pangenome graphs is GraphAligner.

ZHU-XU-xmu commented 2 years ago

Thanks,look forward to the release of subsequent tools.