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vgteam / vg

tools for working with genome variation graphs
https://biostars.org/tag/vg/
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Support for CSI indexing for large genomes #3864

Open brettChapman opened 1 year ago

brettChapman commented 1 year ago

Hi

I'm using vg version v1.40.0 "Suardi".

I'm trying to run vg construct to embed variants into the graph, but it appears that TBI indexing is only used and not CSI. My genome can not be indexed using TBI because it's a large plant genome.

Thanks.

glennhickey commented 1 year ago

For reference, this was also brought up in https://github.com/vcflib/vcflib/issues/367 by way of #3686.