How to evaluate the vg genotyping result

[tanger-code]

The toil-vg sveval can evaluate the SV calls relative to a truth set. Is there a corresponding commands in VG?

[glennhickey]

To evaluate sv calls you can use truvari or sveval. Toil-vg uses sveval too, but it hasn't been maintained for a while.

Evaluating variant calls against a truthset is outside the scope of vg so you will need to use other tools.