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vgteam / vg

tools for working with genome variation graphs
https://biostars.org/tag/vg/
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vg call to GVCF #4083

Open biopig opened 1 year ago

biopig commented 1 year ago

I have a population of 200 individuals, and I know that I can generate VCFs using VG calls. But I want to know how to merge the generation into GVCF, which includes all sample variation information.

glennhickey commented 1 year ago

I'm not sure about gvcf, but if you use vg call -a I think bcftools merge should be able to combine your vcfs.