Open yihangs opened 10 months ago
Have you solved the problem?
Part of. I used vg autoindex
as suggested in https://github.com/human-pangenomics/hpp_pangenome_resources/issues/22. I got the error but autoindex
captured this error, did the pruning step, and indexed the graph again. I think in my case it did the pruning twice and then finally finished the index.
Thanks a lot for your reply!
1. What were you trying to do?
I am trying to reproduce the steps described in
https://github.com/cgroza/personalized_genomes_gbio/issues/1
, however, after I built the vcf file, and usevg construct -S -f -r hg38.fa -v file.vcf > graph.vg
, an error occurs:6. What does running
vg version
say?Thanks!