Handle P-lines that specify haplotypes in vg autoindex

vgteam / vg

tools for working with genome variation graphs

https://biostars.org/tag/vg/

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Handle P-lines that specify haplotypes in vg autoindex #4178

Closed jeizenga closed 10 months ago

jeizenga commented 10 months ago

Changelog Entry

To be copied to the draft changelog by merger:

vg autoindex can identify haplotypes specified as P-lines in a GFA

Description

This also includes handling for the RS tag, so that vg autoindex should be generally more robust to the different path naming conventions flying around right now.