vgteam / vg

tools for working with genome variation graphs
https://biostars.org/tag/vg/
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add chains stats (-C) #4188

Closed glennhickey closed 5 months ago

glennhickey commented 6 months ago

Changelog Entry

To be copied to the draft changelog by merger:

Description

I wanted to count top-level chains in some graphs for the pp paper, but couldn't figure out how to do it. This PR adds a (quick and dirty) option to vg stats that reports the size and count of chains at each level in the graph.