vgteam / vg

tools for working with genome variation graphs
https://biostars.org/tag/vg/
Other
1.1k stars 194 forks source link

Is there a way to chunk the gam file every 500kb length without entering the "path range" manually? #4203

Closed tanger-code closed 8 months ago

tanger-code commented 8 months ago

Hi. I want to chunk the gam file every 500kb length (in linear ref) using vg chunk command. But it request to input path range manually such as 0-500kb, 500kb-1000kb etc. Is there a way to chunk the gam file every 500kb length without entering the path range manually?