Use P lines to improve GFA round-tripping

vgteam / vg

tools for working with genome variation graphs

https://biostars.org/tag/vg/

Other

1.07k stars 191 forks source link

Closed adamnovak closed 3 months ago

adamnovak commented 3 months ago

To be copied to the draft changelog by merger:

vg GFA output should now use P lines instead of W lines when nonzero phase blocks are present, to allow them to be round-tripped.

This should fix #4240 by using P lines instead of W lines if a path has a nonzero phase block number.