Open adamnovak opened 2 weeks ago
Even though we now use a Dozeu with a working allocator in vg's master branch, we also still limit the total number of Dozeu DP calls, ostensibly to work around the old, broken allocator: https://github.com/vgteam/vg/blob/4b1c72ba190093799895d786015eef74d7485550/src/minimizer_mapper.hpp#L338-L344
master
We should remove the limit and make sure that that doesn't cause speed or accuracy regressions, or at least bring it out to the command line.
Even though we now use a Dozeu with a working allocator in vg's
masterbranch, we also still limit the total number of Dozeu DP calls, ostensibly to work around the old, broken allocator: https://github.com/vgteam/vg/blob/4b1c72ba190093799895d786015eef74d7485550/src/minimizer_mapper.hpp#L338-L344We should remove the limit and make sure that that doesn't cause speed or accuracy regressions, or at least bring it out to the command line.