viash-hub / biobox

🌱📦 A collection of bioinformatics tools for working with sequence data.
https://web.viash-hub.dev/package/biobox
MIT License
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Add agat convert genscan2gff #100

Closed Leila011 closed 2 months ago

Leila011 commented 4 months ago

Description

add agat_convert_genscan2gff

Issue ticket number

Closes #xxxx

Checklist before requesting a review

Leila011 commented 3 months ago

agat_convert_genscan2gff source code names but does not use anywhere the argument --inflate_off. Should I open an issue on Agat about it or just remove it from the config file. Or both

Also I am not so sure if --inflate-off should be a boolean_false as i initially specified in the config. I wanted to check its behavior in the source code to understand better but well as explain below I could not.

rcannood commented 3 months ago

agat_convert_genscan2gff source code names but does not use anywhere the argument --inflate_off. Should I open an issue on Agat about it or just remove it from the config file. Or both

Also I am not so sure if --inflate-off should be a boolean_false as i initially specified in the config. I wanted to check its behavior in the source code to understand better but well as explain below I could not.

Feel free to create a issue for this -- their help file explicitly states so !

Whether you include this argument in the component is up to you :)