Closed dweemx closed 4 years ago
When running in parameter exploration mode, the annotations_plot is not passed to the clustering report through papermil (see SC__SCANPY__PARAM_EXPLORE_CLUSTERING_GENERATE_REPORT at https://github.com/vib-singlecell-nf/scanpy/blob/master/processes/reports.nf)
annotations_plot
SC__SCANPY__PARAM_EXPLORE_CLUSTERING_GENERATE_REPORT
When running in parameter exploration mode, the
annotations_plotis not passed to the clustering report through papermil (seeSC__SCANPY__PARAM_EXPLORE_CLUSTERING_GENERATE_REPORTat https://github.com/vib-singlecell-nf/scanpy/blob/master/processes/reports.nf)