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vib-singlecell-nf
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scanpy
A repository for the scanpy module of the vib-singlecell-nf pipeline
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#44
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dweemx
closed
4 years ago
dweemx
commented
4 years ago
Upgrade to Nextflow version 20.04.1
Properly interrupt workflow if no variable genes found
Use new generic PUBLISH workflow
Normalized, HVG scaled, Dim red h5ads are published in
out/data
Fixes #41 (defensively)
Propagate the seed when running the clustering
UMAP is now run before cluser identification, this should not change the results
Fix other bugs 971c2e6 98bff00
out/data