vib-singlecell-nf / vsn-pipelines

A repository of pipelines for single-cell data in Nextflow DSL2
GNU General Public License v3.0
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pipeline executing error #387

Closed GreyRockIQ closed 2 years ago

GreyRockIQ commented 2 years ago

Hello I am trying to run single_sample example data on the pipeline and getting started with the following error

Error executing process > 'single_sample:SINGLE_SAMPLE:SC__FILE_CONVERTER (1)'

Caused by: Process single_sample:SINGLE_SAMPLE:SC__FILE_CONVERTER (1) terminated with an error exit status (127)

I have checked line 127 in the /src/utils/bin/sc_file_converter.py files, but there is nothing that I can adjust them in the single_sample.config file or it is not clear what the error is.

Any suggestions? Thanks GreyRock