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vibansal / PCRduplicates

method to estimate PCR duplication rate from high-throughput sequencing data
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error for PCRdupestimate #6

Open MoustafaAbohawya opened 9 months ago

MoustafaAbohawya commented 9 months ago

Hello, I am using the program to estimate the PCR duplicates in exome seq data. However, the first code run smoothly. The second is not running I would say due to problem with python interpreter. I am using Python 3.9.13. When I run

estimate_PCRduprate.py -i sample.hetreads -f exome > sample.PCRdups

It gives me an error.

for c in xrange(MAX_CLUSTER_SIZE): duplicate_counts.append([0,0.0,0.0,0.0]); TabError: inconsistent use of tabs and spaces in indentation

Is the software compatible only certain version of python? Any suggestion?

vibansal commented 9 months ago

Yes, it was written some time ago and the python code was tested with Python 2.7. I don't think that it will work with Python 3.9 without modifications.