Closed wenjiany closed 4 years ago
Sometimes bam files were aligned to assembly with chromsome names including string "chr", e.g. "chr1", "chr2", etc. This create mismatch with default chromosomes in current program, expecting 1, 2, etc.
Program has an option to address this, please see the NOTES:
If your chromosome names have the 'chr' prefix, use the command line option "--addchr=True" for the runancestry.py script
Sometimes bam files were aligned to assembly with chromsome names including string "chr", e.g. "chr1", "chr2", etc. This create mismatch with default chromosomes in current program, expecting 1, 2, etc.