You have mentioned in your documentation that to run iAdmix on bamfiles, we will need to run calculateGLL first to get the genotype likelihood ratio.Now calculate GLL requires a variant file as an argument. can you please specify the correct format of the variant file required to run calculateGLL. Or provide an example.
Hi,
You have mentioned in your documentation that to run iAdmix on bamfiles, we will need to run calculateGLL first to get the genotype likelihood ratio.Now calculate GLL requires a variant file as an argument. can you please specify the correct format of the variant file required to run calculateGLL. Or provide an example.
Thanks, Apoorva