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vibansal / ancestry

program to estimate admixture coefficients from individual genotype or sequence data
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Running ancestry with bam file #16

Closed bapoorva closed 3 weeks ago

bapoorva commented 3 weeks ago

Hi,

You have mentioned in your documentation that to run iAdmix on bamfiles, we will need to run calculateGLL first to get the genotype likelihood ratio.Now calculate GLL requires a variant file as an argument. can you please specify the correct format of the variant file required to run calculateGLL. Or provide an example.

Thanks, Apoorva

vibansal commented 3 weeks ago

To run iadmix on bamfiles, you need to use the python script. calculateGLL is run internally