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vibansal / crisp

Code for multi-sample variant calling from sequence data of pooled or unpooled DNA samples
MIT License
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Depth fields #15

Closed mullerbsf closed 4 years ago

mullerbsf commented 4 years ago

Dear Bansal,

I am still confused about some of the results, as often they seem to not add up. Take the examples below that I retrieved from a representative marker:

FORMAT: GT:GQ:DP:ADf:ADr:ADb

SAMPLE 1: 0/0/0/1/1:0:18:2,3:4,1:0,0 SAMPLE 2: 0/0/1/1/1:3:25:2,9:4,3:0,0

It seems like the total depth is 18 and 25, respectively. The sums of the ADf, ADr and ADb fields, however, are not equal to the total depth.

I appreciate your attention. Best regards, Barbara.

vibansal commented 4 years ago

Answered in another issue.