convert_pooled_VCF - Githubissues

vibansal / crisp

Code for multi-sample variant calling from sequence data of pooled or unpooled DNA samples

MIT License

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convert_pooled_VCF #23

Open Andrew-N-Black opened 3 years ago

Andrew-N-Black commented 3 years ago

Hello, I'm encountering an issue with trying to run the "convert_pooled_VCF.py" script, specifically with the third argument (pool size). Example: ~/crisp/scripts/convert_pooled_vcf.py tularosa_pass.vcf bamlist 30 > pass.vcf pool sizes: []

I'm unsure if I am at fault or if there is an issue with the argument parser. Please advise, thank you!