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victoriapascal / gutsmash

gutSMASH
GNU Affero General Public License v3.0
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Unbound Local Error in html_output.py #1

Closed Ksherriff closed 3 years ago

Ksherriff commented 3 years ago

Hi,

I am attempting to use GutSmash and have run into this error. Running on Ubuntu 20.04. Using the --minimal, --cb-knownclusters, and --enable-genefunctions options. This is the trace back of the error.

Traceback (most recent call last): File "run_gutsmash.py", line 9, in entrypoint() File "/home/kylacochrane/gutsmash/antismash/main.py", line 126, in entrypoint sys.exit(main(sys.argv[1:])) File "/home/kylacochrane/gutsmash/antismash/main.py", line 115, in main antismash.run_antismash(sequence, options) File "/home/kylacochrane/gutsmash/antismash/main.py", line 609, in run_antismash result = _run_antismash(sequence_file, options) File "/home/kylacochrane/gutsmash/antismash/main.py", line 688, in _run_antismash write_outputs(results, options) File "/home/kylacochrane/gutsmash/antismash/main.py", line 408, in write_outputs html.write(results.records, module_results_per_record, options) File "/home/kylacochrane/gutsmash/antismash/outputs/html/init.py", line 98, in write generate_webpage(records, results, options) File "/home/kylacochrane/gutsmash/antismash/outputs/html/generator.py", line 140, in generate_webpage html_sections = generate_html_sections(record_layers_with_regions, results_by_record_id, options) File "/home/kylacochrane/gutsmash/antismash/outputs/html/generator.py", line 103, in generate_html_sections sections.append(handler.generate_html(region, handler_results, record, options)) File "/home/kylacochrane/gutsmash/antismash/modules/clusterblast/html_output.py", line 43, in generate_html div = generate_div(region_layer, record_layer, options_layer, "knownclusterblast", tooltip) UnboundLocalError: local variable 'tooltip' referenced before assignment

victoriapascal commented 3 years ago

Sorry for the late response. I believe this issue was solved a month ago, see: https://github.com/victoriapascal/gutsmash/commit/140cb2f8a18f12a4e8850c83267cc0319a04c5c1. Have you been able to run gutSMASH by now already? You can now also try the web server version of it at https://gutsmash.bioinformatics.nl/.

Ksherriff commented 3 years ago

Yes I was able to correct the issue.

On Tue, 25 May 2021 at 16:46, victoriapascal @.***> wrote:

Sorry for the late response. I believe this issue was solved a month ago, see: 140cb2f https://github.com/victoriapascal/gutsmash/commit/140cb2f8a18f12a4e8850c83267cc0319a04c5c1. Have you been able to run gutSMASH by now already? You can now also try the web server version of it at https://gutsmash.bioinformatics.nl/.

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