gutSMASH command vs. website output

[mmpust]

Hi, I cannot reproduce the results from the gutSMASH website with the gutSMASH GitHub version. My command:

function gutsmashRun(){
        echo $i
        sample_id=${i%.fasta}
        python3 gutsmash/run_gutsmash.py \
         --genefinding-tool prodigal \
         --cb-knownclusters \
         --enable-genefunctions $i
}

# where i is the input fasta

Output is a one-liner (knownclusterblastoutput.txt)

input|c1|0-3525|+|ctg12_1|MGC00000033|c1|10000-13558|+|BT_1747|pyruvate-flavodoxin_oxidoreductase|AAO76854.1    47.9    1189    573     14      2       1165    8       1175    2.6e-310    1055.8

The pipeline is running without errors, there is just the warning:

/miniconda3/envs/gutsmash_env/lib/python3.10/site-packages/scss/selector.py:26: FutureWarning: Possible nested set at position 329
  SELECTOR_TOKENIZER = re.compile(r'''

Output of gutSMASH website when submitting the GBK file (see knownclusterblastoutput.txt below)

input|c1|152687-153767|+|CDR20291_0112|butyrate MGC00000030|c1|13406-14615|+|L960_3803|propionate/acetate_kinase|AIF63626.1 27.3    154 109 3   157 308 175 327 1.8e-12 64.7
input|c1|154476-154692|+|CDR20291_0114|ferredoxin   MGC00000015|c1|55-265|+|CLOSPO_RS00735|2-oxoacid:acceptor_oxidoreductase_subunit_delta|WP_003357528.1   60.0    40  15  1   5   44  3   41  2.8e-10 55.1
input|c1|154720-155800|+|CDR20291_0115|putative MGC00000015|c1|280-1351|+|CLOSPO_RS00740|2-ketoisovalerate_ferredoxin_reductase|WP_003483006.1  58.8    352 141 3   3   351 4   354 3.2e-126    442.6
input|c1|155799-156552|+|CDR20291_0116|putative MGC00000015|c1|1350-2100|+|CLOSPO_RS00745|2-oxoglutarate_oxidoreductase|WP_003483007.1  67.2    250 81  1   1   250 1   249 1.9e-98 349.7
input|c1|156552-157110|+|CDR20291_0117|putative MGC00000015|c1|2101-2632|+|CLOSPO_RS00750|2-oxoglutarate_ferredoxin_oxidoreductase_subunitgamma|WP_003483008.1  49.1    175 85  2   1   175 1   171 4.6e-44 168.7
input|c1|157219-158626|+|CDR20291_0118|phosphoglucomutase/phosphomannomutase    MGC00000015|c1|2766-4116|+|CLOSPO_RS00755|phosphoglucosamine_mutase|WP_003483009.1  59.6    446 179 1   23  467 3   448 1.2e-152    530.8
input|c2|197572-200281|+|CDR20291_0152|4-hydroxyphenylacetate   MGC00000012|c1|218-2927|+|CD630_01530|4-hydroxyphenylacetate_decarboxylase_catalytic_subunit_HpdB|YP_001086622.1    99.9    902 1   0   1   902 1   902 0.0e+00 1820.8
input|c2|197572-200281|+|CDR20291_0152|4-hydroxyphenylacetate   MGC00000041|c1|15992-18629|+|AUL39_03420|formate_acetyltransferase|KUH59380.1   36.1    875 515 14  36  902 40  878 1.6e-150    524.6
input|c2|197572-200281|+|CDR20291_0152|4-hydroxyphenylacetate   MGC00000043|c1|11091-13611|-|CXZ00_12390|Phenylacetate_decarboxylase|PSH03431.1 29.3    755 455 18  171 897 132 835 2.1e-78 285.0
input|c2|197572-200281|+|CDR20291_0152|4-hydroxyphenylacetate   MGC0000001|c1|1572-4113|+|CLOSPO_RS07630|choline_trimethylamine-lyase|WP_042384851.1    28.4    718 458 13  184 897 176 841 3.0e-72 264.6
input|c2|197572-200281|+|CDR20291_0152|4-hydroxyphenylacetate   MGC00000031|c1|10000-12232|+|CA_C0980|Pyruvate-formate_lyase|AAK78956.1 33.0    191 121 6   712 897 550 738 1.4e-18 86.3
input|c2|197572-200281|+|CDR20291_0152|4-hydroxyphenylacetate   MGC00000034|c1|10742-12971|-|BT_4738|formate_acetyltransferase|AAO79843.1   26.3    190 136 3   714 900 552 740 1.3e-14 73.2
input|c2|200284-200542|+|CDR20291_0153|4-hydroxyphenylacetate   MGC00000012|c1|2930-3188|+|CD630_01540|4-hydroxyphenylacetate_decarboxylase_regulatory_subunit_HpdC|YP_001086623.1  98.8    85  1   0   1   85  1   85  4.4e-50 187.6
input|c2|200504-201485|+|CDR20291_0154|4-hydroxyphenylacetate   MGC00000012|c1|3180-4131|+|CD630_01550|4-hydroxyphenylacetate_decarboxylase_activating_subunit_HpdA|YP_001086624.1  98.1    316 6   0   11  326 1   316 1.2e-193    666.4
input|c2|200504-201485|+|CDR20291_0154|4-hydroxyphenylacetate   MGC00000043|c1|10000-10948|-|CXZ00_12385|Phenylacetate_decarboxylase_activating_enzyme|PSH03430.1   41.3    312 173 5   16  321 5   312 5.9e-71 258.8
input|c2|200504-201485|+|CDR20291_0154|4-hydroxyphenylacetate   MGC00000041|c1|20190-21138|+|AUL39_03430|glycyl_radical-activating_protein|KUH59382.1   38.8    312 180 3   16  320 7   314 1.7e-65 240.7
input|c2|200504-201485|+|CDR20291_0154|4-hydroxyphenylacetate   MGC0000001|c1|4294-5248|+|CLOSPO_RS07635|choline_TMA-lyase-activating_enzyme|WP_003494063.1 33.9    295 181 7   21  308 15  302 1.7e-46 177.6
input|c2|200504-201485|+|CDR20291_0154|4-hydroxyphenylacetate   MGC00000039|c1|10000-10909|+|ctg22_31|NA|NA 33.1    296 186 6   20  311 4   291 1.8e-43 167.5
input|c2|200504-201485|+|CDR20291_0154|4-hydroxyphenylacetate   MGC00000031|c1|12242-12956|+|CA_C0981|Pyruvate-formate-lyase-activating_enzyme|AAK78957.1   27.1    299 137 8   19  308 2   228 9.9e-26 108.6
input|c2|200504-201485|+|CDR20291_0154|4-hydroxyphenylacetate   MGC00000034|c1|10000-10729|-|BT_4737|pyruvate_formate-lyase_activating_enzyme|AAO79842.1    24.2    293 155 5   21  311 5   232 8.6e-22 95.5
input|c3|437492-438491|-|CDR20291_0365|(R)-2-hydroxyisocaproate MGC00000014|c1|103-1102|-|CD630_03940|D-lactate_dehydrogenase|YP_001086860.1    100.0   332 0   0   1   332 1   332 1.4e-189    652.9
input|c3|437492-438491|-|CDR20291_0365|(R)-2-hydroxyisocaproate MGC0000004|c1|14391-15396|-|CLOSPO_00317|(R)-2-hydroxyisocaproate_dehydrogenase|EDU39262.1  63.5    334 120 1   1   332 1   334 8.8e-123    431.0
input|c3|437492-438491|-|CDR20291_0365|(R)-2-hydroxyisocaproate MGC0000004|c1|13202-14198|+|CLOSPO_00316|4-phosphoerythronate_dehydrogenase|EDU39261.1  42.8    332 183 7   1   330 1   327 6.4e-65 238.8
input|c3|439167-440367|+|CDR20291_0366|isocaprenoyl-CoA:2-hydroxyisocaproate    MGC00000014|c1|1778-2978|+|CD630_03950|isocaprenoyl-CoA:2-hydroxyisocaproate_CoA-transferase|YP_001086861.1 100.0   399 0   0   1   399 1   399 7.1e-236    807.0
input|c3|439167-440367|+|CDR20291_0366|isocaprenoyl-CoA:2-hydroxyisocaproate    MGC0000002|c1|97-1312|+|CLOSPO_02756|3-methyl-2-oxobutanoate_dehydrogenase_(2-methylpropanoyl-transferring)|EDU36588.1  66.7    399 132 1   1   398 6   404 7.3e-164    567.8
input|c3|439167-440367|+|CDR20291_0366|isocaprenoyl-CoA:2-hydroxyisocaproate    MGC0000004|c1|3470-4703|+|CLOSPO_00308|cinnamoyl-CoA:phenyllactate_CoA-transferase|EDU39253.1   48.2    398 202 2   2   395 7   404 4.2e-111    392.5
input|c3|439167-440367|+|CDR20291_0366|isocaprenoyl-CoA:2-hydroxyisocaproate    MGC00000018|c1|13116-14334|-|C_RS00220|L-carnitine_CoA-transferase|WP_000349942.1   25.1    402 264 11  3   388 12  392 8.6e-24 102.4
input|c3|440396-441206|+|CDR20291_0367|activator    MGC00000014|c1|3016-3817|+|CD630_03960|2-hydroxyisocaproyl-CoA_dehydratase_activator|YP_001086862.2 100.0   266 0   0   4   269 1   266 3.9e-145    505.0
input|c3|440396-441206|+|CDR20291_0367|activator    MGC0000002|c1|9194-9959|+|CLOSPO_02763|putative_CoA-substrate-specific_enzyme_activase|EDU36595.1   69.7    254 77  0   7   260 1   254 7.2e-99 351.3
input|c3|440396-441206|+|CDR20291_0367|activator    MGC00000016|c1|29495-30275|+|CPRO_RS04095|2-hydroxyglutaryl-CoA_dehydratase|WP_066048110.1  56.2    258 113 0   4   261 1   258 8.6e-84 301.2
input|c3|440396-441206|+|CDR20291_0367|activator    MGC0000004|c1|4708-5503|+|CLOSPO_00309|R-phenyllactate_dehydratase_activator|EDU39254.1 57.4    263 112 0   1   263 1   263 6.1e-82 295.0
input|c3|440396-441206|+|CDR20291_0367|activator    MGC0000009|c1|6952-7756|+|HMPREF9474_RS14710|2-hydroxyglutaryl-CoA_dehydratase|WP_003501725.1   54.0    265 119 2   1   263 1   264 5.6e-75 271.9
input|c3|441214-442447|+|CDR20291_0368|subunit  MGC00000014|c1|3831-5058|+|CD630_03970|oxygen-sensitive_2-hydroxyisocaproyl-CoA_dehydratase_subunit_B|YP_001086863.2    100.0   408 0   0   3   410 1   408 1.2e-243    832.8
input|c3|441214-442447|+|CDR20291_0368|subunit  MGC0000002|c1|1374-2607|+|CLOSPO_02757|R-phenyllactate_dehydratase,_medium_subunit|EDU36589.1   82.9    403 69  0   2   404 4   406 3.7e-203    698.4
input|c3|441214-442447|+|CDR20291_0368|subunit  MGC0000004|c1|5474-6731|+|CLOSPO_00310|R-phenyllactate_dehydratase,_medium_subunit|EDU39255.1   51.6    374 178 2   31  404 46  416 8.9e-117    411.4
input|c3|441214-442447|+|CDR20291_0368|subunit  MGC00000016|c1|30290-31559|+|CPRO_RS04100|phenyllactate_dehydratase|WP_066048111.1  40.9    416 229 4   1   400 1   415 2.8e-94 336.7
input|c3|441214-442447|+|CDR20291_0368|subunit  MGC0000009|c1|7777-9220|+|HMPREF9474_RS14715|2-hydroxyglutaryl-CoA_dehydratase|WP_003501726.1   40.4    470 198 5   10  404 13  475 4.8e-94 335.9
input|c3|442446-443574|+|CDR20291_0369|subunit  MGC00000014|c1|5057-6185|+|CD630_03980|oxygen-sensitive_2-hydroxyisocaproyl-CoA_dehydratase_subunit_C|YP_001086864.1    99.7    375 1   0   1   375 1   375 1.5e-219    752.7
input|c3|442446-443574|+|CDR20291_0369|subunit  MGC0000002|c1|2606-3734|+|CLOSPO_02758|R-phenyllactate_dehydratase,_small_subunit|EDU36590.1    66.9    369 122 0   4   372 7   375 8.1e-149    517.7
input|c3|442446-443574|+|CDR20291_0369|subunit  MGC0000004|c1|6732-7857|+|CLOSPO_00311|R-phenyllactate_dehydratase,_small_subunit|EDU39256.1    49.9    371 185 1   2   372 5   374 5.7e-110    388.7
input|c3|442446-443574|+|CDR20291_0369|subunit  MGC00000016|c1|31575-32700|+|CPRO_RS04105|phenyllactate_dehydratase|WP_066048114.1  47.6    374 191 3   1   372 4   374 6.3e-101    358.6
input|c3|442446-443574|+|CDR20291_0369|subunit  MGC0000009|c1|9222-10374|+|HMPREF9474_RS14720|2-hydroxyglutaryl-CoA_dehydratase|WP_003501727.1  41.1    380 217 5   1   374 3   381 1.9e-81 293.9
input|c3|443621-444755|+|CDR20291_0370|acyl-CoA MGC00000014|c1|6232-7366|+|CD630_03990|acyl-CoA_dehydrogenase|YP_001086865.1    100.0   377 0   0   1   377 1   377 2.1e-213    732.3
input|c3|443621-444755|+|CDR20291_0370|acyl-CoA MGC0000002|c1|4238-5372|+|CLOSPO_02759|acyl-CoA_dehydrogenase,_C-terminal_domain_protein|EDU36591.1 76.4    377 89  0   1   377 1   377 9.6e-166    573.9
input|c3|443621-444755|+|CDR20291_0370|acyl-CoA MGC0000004|c1|8024-9158|+|CLOSPO_00312|acyl-CoA_dehydrogenase,_C-terminal_domain_protein|EDU39257.1 56.2    377 165 0   1   377 1   377 1.4e-116    410.6
input|c3|443621-444755|+|CDR20291_0370|acyl-CoA MGC0000005|c1|3089-4229|+|CLOSPO_RS02085|acyl-CoA_dehydrogenase|WP_003483432.1  56.3    373 163 0   4   376 6   378 7.0e-116    408.3
input|c3|443621-444755|+|CDR20291_0370|acyl-CoA MGC00000050|c1|13193-14333|+|AWO_RS08095|acyl-CoA_dehydrogenase_family_protein|WP_014355957.1   54.8    378 170 1   1   377 1   378 1.1e-113    401.0
input|c3|443621-444755|+|CDR20291_0370|acyl-CoA MGC00000017|c1|10000-11146|-|CXIVA_RS12690|acyl-CoA_dehydrogenase|WP_013978446.1    51.1    374 183 0   3   376 7   380 2.7e-104    369.8
input|c3|443621-444755|+|CDR20291_0370|acyl-CoA MGC00000018|c1|14461-15604|-|C_RS00225|crotonobetainyl-CoA_dehydrogenase|WP_000347117.1 33.1    375 247 3   4   377 6   377 8.7e-50 188.7
input|c3|444787-445573|+|CDR20291_0371|electron MGC00000014|c1|7398-8184|+|CD630_04000|electron_transfer_flavoprotein_subunit_beta|YP_001086866.1   100.0   261 0   0   1   261 1   261 4.8e-148    514.6
input|c3|444787-445573|+|CDR20291_0371|electron MGC0000002|c1|5396-6206|+|CLOSPO_02760|electron_transfer_flavoprotein_domain_protein|EDU36592.1 71.2    264 73  1   1   261 6   269 1.5e-109    386.7
input|c3|444787-445573|+|CDR20291_0371|electron MGC0000004|c1|9161-9965|+|CLOSPO_00313|electron_transfer_flavoprotein_domain_protein|EDU39258.1 67.8    264 82  2   1   261 4   267 9.8e-101    357.5
input|c3|444787-445573|+|CDR20291_0371|electron MGC00000050|c1|14397-15186|+|AWO_RS08100|electron_transfer_flavoprotein_subunit_beta/FixA_family_protein|WP_014355958.1 64.5    262 92  1   1   261 1   262 6.1e-95 338.2
input|c3|444787-445573|+|CDR20291_0371|electron MGC0000005|c1|4240-5020|+|CLOSPO_RS02090|electron_transfer_flavoprotein_subunit_beta|WP_003483434.1 57.5    261 109 2   1   261 1   259 5.9e-82 295.0
input|c3|445591-446629|+|CDR20291_0372|electron MGC00000014|c1|8202-9240|+|CD630_04010|electron_transfer_flavoprotein_subunit_alpha|YP_001086867.1  100.0   345 0   0   1   345 1   345 7.4e-197    677.2
input|c3|445591-446629|+|CDR20291_0372|electron MGC0000002|c1|6224-7274|+|CLOSPO_02761|electron_transfer_flavoprotein_FAD-binding_domain_protein|EDU36593.1 76.3    333 79  0   5   337 5   337 2.3e-150    522.7
input|c3|445591-446629|+|CDR20291_0372|electron MGC0000004|c1|9982-11179|+|CLOSPO_00314|electron_transfer_flavoprotein_FAD-binding_domain_protein|EDU39259.1    71.4    332 95  0   5   336 63  394 5.4e-139    485.0
input|c3|445591-446629|+|CDR20291_0372|electron MGC00000050|c1|15201-16392|+|AWO_RS08105|electron_transfer_flavoprotein_subunit_alpha|WP_014355959.1    69.9    329 99  0   8   336 66  394 2.8e-135    472.6
input|c3|445591-446629|+|CDR20291_0372|electron MGC0000005|c1|5035-6040|+|CLOSPO_RS02095|electron_transfer_flavoprotein_subunit_alpha|WP_003483436.1    57.1    333 143 0   6   338 2   334 1.4e-115    407.1
input|c3|445591-446629|+|CDR20291_0372|electron MGC00000019|c1|12263-13124|-|C_RS15815|electron_transfer_flavoprotein_subunit_alpha/FixB_family_protein|WP_001305277.1  26.2    237 153 6   100 330 58  278 3.7e-15 73.6
input|c3|447111-448743|+|CDR20291_0373|sigma-54-dependent   MGC00000025|c1|13623-15069|-|CLOPA_RS18875|sigma-54-dependent_Fis_family_transcriptional_regulator|WP_015617028.1   39.0    454 252 5   102 537 25  471 7.7e-84 302.4
input|c3|447111-448743|+|CDR20291_0373|sigma-54-dependent   MGC00000011|c1|11092-12847|-|CLOST_RS11245|Fis_family_transcriptional_regulator|WP_013362446.1  38.0    474 250 14  89  537 122 576 1.5e-74 271.6
input|c3|448877-449804|-|CDR20291_0374|putative MGC00000051|c1|16150-17155|-|BT_1691|fructose-bisphosphate_aldolase|AAO76798.1  51.8    326 138 3   1   307 7   332 6.3e-91 325.1
input|c4|799875-801795|+|CDR20291_0643|putative MGC00000040|c1|10000-11920|+|ctg1_730|NA|NA 99.8    639 1   0   1   639 1   639 0.0e+00 1264.6
input|c4|799875-801795|+|CDR20291_0643|putative MGC00000038|c1|10954-12847|+|RUMHYD_00315|carbon-monoxide_dehydrogenase,_catalytic_subunit|EEG50800.1   53.8    611 281 1   12  622 16  625 2.7e-192    662.9
input|c4|802104-802884|+|CDR20291_0644|putative MGC00000040|c1|12229-13009|+|ctg1_731|NA|NA 100.0   259 0   0   1   259 1   259 4.7e-148    514.6
input|c4|802104-802884|+|CDR20291_0644|putative MGC00000038|c1|12905-13670|+|RUMHYD_00316|CobQ/CobB/MinD/ParA_nucleotide_binding_domain_protein|EEG50801.1  57.7    253 105 1   1   253 1   251 1.1e-85 307.4
input|c4|802104-802884|+|CDR20291_0644|putative MGC00000038|c1|10000-10771|+|RUMHYD_00314|CobQ/CobB/MinD/ParA_nucleotide_binding_domain_protein|EEG50799.1  26.7    262 169 8   3   253 5   254 6.9e-14 68.9
input|c4|803132-804809|+|CDR20291_0645|formate--tetrahydrofolate    MGC00000040|c1|13257-14934|+|ctg1_732|NA|NA 100.0   558 0   0   1   558 1   558 0.0e+00 1105.9
input|c4|804913-805546|+|CDR20291_0646|methenyltetrahydrofolate MGC00000040|c1|15038-15671|+|ctg1_733|NA|NA 99.5    210 1   0   1   210 1   210 2.4e-113    399.1
input|c4|804913-805546|+|CDR20291_0646|methenyltetrahydrofolate MGC00000038|c1|26609-27263|+|RUMHYD_00324|Formiminotransferase-cyclodeaminase|EEG50711.1    52.0    204 98  0   1   204 9   212 1.0e-52 197.6
input|c4|805637-806510|+|CDR20291_0647|putative MGC00000040|c1|15762-16635|+|ctg1_734|NA|NA 100.0   290 0   0   1   290 1   290 7.6e-163    563.9
input|c4|805637-806510|+|CDR20291_0647|putative MGC00000038|c1|27281-28136|+|RUMHYD_00325|tetrahydrofolate_dehydrogenase/cyclohydrolase,_NAD(P)-binding_domain_protein|EEG50712.1   52.0    271 130 0   13  283 7   277 6.8e-79 285.0
input|c4|806546-807221|+|CDR20291_0648|conserved    MGC00000040|c1|16671-17346|+|ctg1_735|NA|NA 100.0   224 0   0   1   224 1   224 2.0e-131    459.1
input|c4|807256-808138|+|CDR20291_0649|putative MGC00000040|c1|17381-18263|+|ctg1_736|NA|NA 99.7    293 1   0   1   293 1   293 5.2e-167    577.8
input|c4|808181-809567|+|CDR20291_0650|putative MGC00000040|c1|18306-19692|+|ctg1_737|NA|NA 99.8    461 1   0   1   461 1   461 7.1e-264    900.2
input|c4|809622-810393|+|CDR20291_0651|putative MGC00000040|c1|19747-20518|+|ctg1_738|NA|NA 100.0   256 0   0   1   256 1   256 7.0e-144    500.7
input|c4|809622-810393|+|CDR20291_0651|putative MGC00000038|c1|10000-10771|+|RUMHYD_00314|CobQ/CobB/MinD/ParA_nucleotide_binding_domain_protein|EEG50799.1  56.2    256 111 1   1   255 1   256 1.7e-81 293.5
input|c4|809622-810393|+|CDR20291_0651|putative MGC00000038|c1|12905-13670|+|RUMHYD_00316|CobQ/CobB/MinD/ParA_nucleotide_binding_domain_protein|EEG50801.1  28.3    244 141 9   5   230 3   230 5.4e-19 85.9
input|c4|810412-811357|+|CDR20291_0652|putative MGC00000040|c1|20537-21482|+|ctg1_739|NA|NA 100.0   314 0   0   1   314 1   314 2.7e-182    628.6
input|c4|810412-811357|+|CDR20291_0652|putative MGC00000038|c1|18323-19090|+|RUMHYD_00319|CO_dehydrogenase/acetyl-CoA_synthase_delta_subunit|EEG50804.1 53.6    252 116 1   1   252 1   251 5.1e-72 262.3
input|c4|811387-812755|+|CDR20291_0653|putative MGC00000040|c1|21512-22880|+|ctg1_740|NA|NA 100.0   455 0   0   1   455 1   455 2.4e-264    901.7
input|c4|811387-812755|+|CDR20291_0653|putative MGC00000038|c1|19623-20544|+|RUMHYD_00320|CO_dehydrogenase/acetyl-CoA_synthase_delta_subunit|EEG50749.1 55.0    307 135 2   142 448 2   305 7.4e-96 342.0
input|c4|812804-813611|+|CDR20291_0654|putative MGC00000040|c1|22929-23736|+|ctg1_741|NA|NA 100.0   268 0   0   1   268 1   268 1.1e-155    540.0
input|c4|812804-813611|+|CDR20291_0654|putative MGC00000038|c1|20580-21369|+|RUMHYD_00321|pterin_binding_enzyme|EEG50750.1  59.9    262 104 1   1   261 1   262 3.5e-93 332.4
input|c4|813667-815794|+|CDR20291_0655|putative MGC00000040|c1|23792-25919|+|ctg1_742|NA|NA 100.0   708 0   0   1   708 1   708 0.0e+00 1405.6
input|c4|813667-815794|+|CDR20291_0655|putative MGC00000038|c1|16119-18246|+|RUMHYD_00318|CO_dehydrogenase/CO-methylating_acetyl-CoA_synthase_complex,_beta_subunit|EEG50803.1  60.2    709 277 3   3   708 2   708 2.7e-254    869.0
input|c4|813667-815794|+|CDR20291_0655|putative MGC00000038|c1|13688-15824|+|RUMHYD_00317|CO_dehydrogenase/CO-methylating_acetyl-CoA_synthase_complex,_beta_subunit|EEG50802.1  57.5    709 296 3   3   708 5   711 1.1e-242    830.5
input|c4|815880-816258|+|CDR20291_0656|putative MGC00000040|c1|26005-26383|+|ctg1_743|NA|NA 100.0   125 0   0   1   125 1   125 8.0e-69 250.4
input|c4|815880-816258|+|CDR20291_0656|putative MGC00000027|c1|19377-19758|+|CLOST_RS02265|glycine_cleavage_system_protein_H|WP_013360650.1 54.7    117 52  1   9   125 8   123 1.1e-30 123.6
input|c4|816303-818298|+|CDR20291_0657|putative MGC00000040|c1|26494-28423|+|ctg1_744|NA|NA 99.7    642 2   0   23  664 1   642 0.0e+00 1269.2
input|c4|816303-818298|+|CDR20291_0657|putative MGC00000038|c1|22127-24056|+|RUMHYD_00322|2Fe-2S_iron-sulfur_cluster_binding_domain_protein|EEG50747.1  46.3    643 338 3   23  660 1   641 5.8e-174    602.1
input|c5|852067-852802|-|CDR20291_0686|pyruvate MGC00000044|c1|10000-10741|-|b0902|pyruvate_formate-lyase_activating_enzyme|AAC73988.1  50.8    242 113 2   4   241 5   244 9.5e-74 267.7
input|c5|852067-852802|-|CDR20291_0686|pyruvate MGC00000031|c1|12242-12956|+|CA_C0981|Pyruvate-formate-lyase-activating_enzyme|AAK78957.1   46.4    222 118 1   4   225 2   222 2.6e-63 233.0
input|c5|852067-852802|-|CDR20291_0686|pyruvate MGC00000034|c1|10000-10729|-|BT_4737|pyruvate_formate-lyase_activating_enzyme|AAO79842.1    40.1    232 138 1   6   237 5   235 2.1e-52 196.8
input|c5|852067-852802|-|CDR20291_0686|pyruvate MGC0000001|c1|4294-5248|+|CLOSPO_RS07635|choline_TMA-lyase-activating_enzyme|WP_003494063.1 29.9    301 149 2   3   241 12  312 4.8e-41 159.1
input|c5|852067-852802|-|CDR20291_0686|pyruvate MGC00000043|c1|10000-10948|-|CXZ00_12385|Phenylacetate_decarboxylase_activating_enzyme|PSH03430.1   28.7    296 143 5   2   230 6   300 9.0e-32 128.3
input|c5|852067-852802|-|CDR20291_0686|pyruvate MGC00000039|c1|10000-10909|+|ctg22_31|NA|NA 28.2    287 144 5   16  241 15  300 3.8e-30 122.9
input|c5|852067-852802|-|CDR20291_0686|pyruvate MGC00000041|c1|20190-21138|+|AUL39_03430|glycyl_radical-activating_protein|KUH59382.1   50.0    40  20  0   2   41  8   47  8.2e-09 52.0
input|c5|852961-855193|-|CDR20291_0687|formate  MGC00000044|c1|10932-13215|-|b0903|pyruvate_formate-lyase|AAC73989.1    69.1    750 222 3   3   742 11  760 2.5e-311    1058.5
input|c5|852961-855193|-|CDR20291_0687|formate  MGC00000031|c1|10000-12232|+|CA_C0980|Pyruvate-formate_lyase|AAK78956.1 65.8    740 251 2   4   742 5   743 4.6e-297    1011.1
input|c5|852961-855193|-|CDR20291_0687|formate  MGC00000030|c1|14648-16943|+|L960_3804|pyruvate_formate-lyase_4/2-ketobutyrate_formate-lyase|AIF63627.1 65.1    747 251 3   2   738 14  760 1.3e-291    993.0
input|c5|852961-855193|-|CDR20291_0687|formate  MGC00000034|c1|10742-12971|-|BT_4738|formate_acetyltransferase|AAO79843.1   60.0    737 293 2   7   742 7   742 2.4e-261    892.5
input|c5|852961-855193|-|CDR20291_0687|formate  MGC00000043|c1|11091-13611|-|CXZ00_12390|Phenylacetate_decarboxylase|PSH03431.1 23.7    561 374 17  221 737 285 835 9.7e-29 119.8
input|c6|997404-998880|+|CDR20291_0818|arginine MGC0000006|c1|3813-5289|-|CLOST_RS00410|arginine_decarboxylase|WP_013360267.1   49.2    480 243 1   12  491 4   482 1.3e-133    467.6
input|c6|997404-998880|+|CDR20291_0818|arginine MGC00000054|c1|13385-14837|-|DW028_08745|aminotransferase_class_I/II-fold_pyridoxal_phosphate-dependent_enzyme|RHL28714.1   45.2    478 260 2   14  491 7   482 9.4e-121    424.9
input|c6|997404-998880|+|CDR20291_0818|arginine MGC00000053|c1|6980-8429|+|DWZ50_18070|aminotransferase_class_V-fold_PLP-dependent_enzyme|RHM69540.1    44.2    480 266 2   11  490 4   481 5.7e-118    415.6
input|c6|998966-999380|+|CDR20291_0819|S-adenosylmethionine MGC0000006|c1|2791-3223|-|CLOST_RS13305|S-adenosylmethionine_decarboxylase|WP_013360266.1   61.8    136 51  1   1   135 1   136 2.9e-48 182.2
input|c6|999409-1000261|+|CDR20291_0820|spermidine  MGC0000006|c1|1932-2781|-|CLOST_RS00400|spermidine_synthase|WP_013360265.1  72.1    283 78  1   1   283 1   282 1.7e-122    429.9
input|c6|999409-1000261|+|CDR20291_0820|spermidine  MGC00000053|c1|8443-9295|+|DWZ50_18075|polyamine_aminopropyltransferase|RHM69541.1  52.5    282 133 1   1   282 1   281 5.8e-91 325.1
input|c6|999409-1000261|+|CDR20291_0820|spermidine  MGC00000054|c1|12512-13370|-|DW028_08740|polyamine_aminopropyltransferase|RHL28713.1    50.9    283 138 1   1   283 1   282 1.3e-90 323.9
input|c6|1000271-1001129|+|CDR20291_0821|putative   MGC0000006|c1|1088-1940|-|CLOST_RS00395|agmatinase|WP_013360264.1   53.1    277 127 2   3   279 7   280 1.3e-85 307.4
input|c6|1000271-1001129|+|CDR20291_0821|putative   MGC00000053|c1|9284-10142|+|DWZ50_18080|agmatinase|RHM69542.1   53.6    278 127 2   3   280 8   283 6.3e-85 305.1
input|c6|1000271-1001129|+|CDR20291_0821|putative   MGC00000052|c1|9380-10301|-|E2348C_RS17100|agmatinase|WP_000105562.1    27.3    289 197 7   4   283 19  303 2.9e-29 120.2
input|c6|1001936-1003466|+|CDR20291_0823|iron-dependent MGC00000038|c1|35297-37052|+|RUMHYD_00334|4Fe-4S_binding_domain_protein|EEG50721.1  29.2    359 189 12  124 478 11  308 1.3e-27 115.5
input|c6|1001936-1003466|+|CDR20291_0823|iron-dependent MGC00000038|c1|33507-35253|+|RUMHYD_00333|hydrogenase,_Fe-only|EEG50720.1   28.5    267 148 8   255 478 253 519 1.9e-20 91.7
input|c6|1003723-1005220|+|CDR20291_0824|iron-dependent MGC00000038|c1|35297-37052|+|RUMHYD_00334|4Fe-4S_binding_domain_protein|EEG50721.1  27.6    359 197 11  113 468 11  309 3.6e-27 114.0
input|c7|1125677-1126814|+|CDR20291_0910|butyryl-CoA    MGC0000005|c1|3089-4229|+|CLOSPO_RS02085|acyl-CoA_dehydrogenase|WP_003483432.1  65.4    373 129 0   5   377 6   378 2.5e-142    496.1
input|c7|1125677-1126814|+|CDR20291_0910|butyryl-CoA    MGC0000002|c1|4238-5372|+|CLOSPO_02759|acyl-CoA_dehydrogenase,_C-terminal_domain_protein|EDU36591.1 60.1    376 150 0   3   378 2   377 6.1e-128    448.4
input|c7|1125677-1126814|+|CDR20291_0910|butyryl-CoA    MGC00000014|c1|6232-7366|+|CD630_03990|acyl-CoA_dehydrogenase|YP_001086865.1    57.7    376 159 0   3   378 2   377 1.0e-119    421.0
input|c7|1125677-1126814|+|CDR20291_0910|butyryl-CoA    MGC0000004|c1|8024-9158|+|CLOSPO_00312|acyl-CoA_dehydrogenase,_C-terminal_domain_protein|EDU39257.1 51.3    374 182 0   5   378 4   377 5.9e-107    378.6
input|c7|1125677-1126814|+|CDR20291_0910|butyryl-CoA    MGC00000050|c1|13193-14333|+|AWO_RS08095|acyl-CoA_dehydrogenase_family_protein|WP_014355957.1   51.7    375 180 1   5   378 4   378 2.3e-103    366.7
input|c7|1125677-1126814|+|CDR20291_0910|butyryl-CoA    MGC00000017|c1|10000-11146|-|CXIVA_RS12690|acyl-CoA_dehydrogenase|WP_013978446.1    45.9    370 200 0   8   377 11  380 2.9e-93 333.2
input|c7|1125677-1126814|+|CDR20291_0910|butyryl-CoA    MGC00000018|c1|14461-15604|-|C_RS00225|crotonobetainyl-CoA_dehydrogenase|WP_000347117.1 28.7    383 262 4   1   378 1   377 3.5e-43 166.8
input|c7|1126857-1127655|+|CDR20291_0911|electron   MGC0000005|c1|4240-5020|+|CLOSPO_RS02090|electron_transfer_flavoprotein_subunit_beta|WP_003483434.1 60.8    260 101 1   6   265 1   259 2.8e-87 312.8
input|c7|1126857-1127655|+|CDR20291_0911|electron   MGC00000014|c1|7398-8184|+|CD630_04000|electron_transfer_flavoprotein_subunit_beta|YP_001086866.1   56.5    262 111 3   6   265 1   261 3.0e-81 292.7
input|c7|1126857-1127655|+|CDR20291_0911|electron   MGC0000002|c1|5396-6206|+|CLOSPO_02760|electron_transfer_flavoprotein_domain_protein|EDU36592.1 50.7    270 127 3   1   265 1   269 9.0e-78 281.2
input|c7|1126857-1127655|+|CDR20291_0911|electron   MGC0000004|c1|9161-9965|+|CLOSPO_00313|electron_transfer_flavoprotein_domain_protein|EDU39258.1 55.8    265 111 5   6   265 4   267 5.8e-77 278.5
input|c7|1126857-1127655|+|CDR20291_0911|electron   MGC00000050|c1|14397-15186|+|AWO_RS08100|electron_transfer_flavoprotein_subunit_beta/FixA_family_protein|WP_014355958.1 54.0    263 117 4   6   265 1   262 4.9e-76 275.4
input|c7|1127673-1128684|+|CDR20291_0912|electron   MGC0000005|c1|5035-6040|+|CLOSPO_RS02095|electron_transfer_flavoprotein_subunit_alpha|WP_003483436.1    52.6    321 152 0   4   324 9   329 8.4e-97 344.7
input|c7|1127673-1128684|+|CDR20291_0912|electron   MGC00000014|c1|8202-9240|+|CD630_04010|electron_transfer_flavoprotein_subunit_alpha|YP_001086867.1  52.8    322 152 0   3   324 12  333 2.7e-95 339.7
input|c7|1127673-1128684|+|CDR20291_0912|electron   MGC0000004|c1|9982-11179|+|CLOSPO_00314|electron_transfer_flavoprotein_FAD-binding_domain_protein|EDU39259.1    50.9    328 161 0   4   331 71  398 6.2e-92 328.6
input|c7|1127673-1128684|+|CDR20291_0912|electron   MGC0000002|c1|6224-7274|+|CLOSPO_02761|electron_transfer_flavoprotein_FAD-binding_domain_protein|EDU36593.1 51.6    322 156 0   3   324 12  333 2.6e-90 323.2
input|c7|1127673-1128684|+|CDR20291_0912|electron   MGC00000050|c1|15201-16392|+|AWO_RS08105|electron_transfer_flavoprotein_subunit_alpha|WP_014355959.1    51.4    321 156 0   4   324 71  391 1.7e-89 320.5
input|c7|1127673-1128684|+|CDR20291_0912|electron   MGC00000019|c1|12263-13124|-|C_RS15815|electron_transfer_flavoprotein_subunit_alpha/FixB_family_protein|WP_001305277.1  26.3    274 181 5   52  324 28  281 1.3e-17 81.6
input|c7|1128702-1129500|+|CDR20291_0913|3-hydroxybutyryl-CoA   MGC0000005|c1|60-843|+|CLOSPO_RS02070|crotonase|WP_003483427.1  57.1    254 109 0   10  263 4   257 1.0e-76 277.7
input|c7|1128702-1129500|+|CDR20291_0913|3-hydroxybutyryl-CoA   MGC00000018|c1|10596-11382|-|C_RS00210|carnitinyl-CoA_dehydratase|WP_000004399.1    36.1    255 156 5   10  259 3   255 1.2e-32 131.3
input|c7|1129597-1130443|+|CDR20291_0914|3-hydroxybutyryl-CoA   MGC0000005|c1|862-1693|+|CLOSPO_RS02075|3-hydroxybutyryl-CoA_dehydrogenase|WP_003483429.1   62.4    279 101 1   1   279 1   275 2.0e-96 343.2
input|c7|1130514-1131705|+|CDR20291_0915|acetyl-CoA MGC0000005|c1|1717-2896|+|CLOSPO_RS02080|acetyl-CoA_acetyltransferase|WP_003483430.1    70.8    391 114 0   6   396 1   391 2.5e-156    542.7
input|c8|1192231-1193569|+|CDR20291_0973|electron   MGC00000037|c1|13606-14950|-|CLOSPO_00573|electron_transport_complex,_RnfABCDGE_type,_C_subunit|EDU37758.1  49.8    442 218 3   1   441 9   447 3.2e-112    396.4
input|c8|1192231-1193569|+|CDR20291_0973|electron   MGC00000011|c1|9622-10801|-|CLOST_RS11240|proline_reductase-associated_electron_transfer_protein_PrdC|WP_041487208.1    31.5    324 198 7   33  353 4   306 1.4e-38 151.8
input|c8|1193591-1194569|+|CDR20291_0974|electron   MGC00000037|c1|12651-13584|-|CLOSPO_00572|electron_transport_complex,_RnfABCDGE_type,_D_subunit|EDU37757.1  57.4    324 119 3   2   323 3   309 1.4e-96 344.0
input|c8|1194568-1195138|+|CDR20291_0975|electron   MGC00000037|c1|12079-12652|-|CLOSPO_00571|electron_transport_complex,_RnfABCDGE_type,_G_subunit|EDU37756.1  45.5    187 96  3   2   187 4   185 1.8e-32 130.2
input|c8|1195150-1195744|+|CDR20291_0976|electron   MGC00000037|c1|11480-12080|-|CLOSPO_00570|electron_transport_complex,_RnfABCDGE_type,_E_subunit|EDU37755.1  63.1    195 72  0   3   197 4   198 3.0e-62 229.2
input|c8|1195758-1196334|+|CDR20291_0977|electron   MGC00000037|c1|10847-11438|-|CLOSPO_00569|electron_transport_complex,_RnfABCDGE_type,_A_subunit|EDU37754.1  51.8    191 90  2   1   189 5   195 3.5e-47 179.1
input|c8|1195758-1196334|+|CDR20291_0977|electron   MGC00000037|c1|11480-12080|-|CLOSPO_00570|electron_transport_complex,_RnfABCDGE_type,_E_subunit|EDU37755.1  29.1    172 111 3   11  176 12  178 1.3e-14 70.9
input|c8|1196349-1197321|+|CDR20291_0978|electron   MGC00000037|c1|10000-10834|-|CLOSPO_00568|electron_transport_complex,_RnfABCDGE_type,_B_subunit|EDU37753.1  45.2    239 129 2   3   239 4   242 1.1e-50 191.4
input|c8|1205160-1205958|+|CDR20291_0987|septum MGC00000038|c1|10000-10771|+|RUMHYD_00314|CobQ/CobB/MinD/ParA_nucleotide_binding_domain_protein|EEG50799.1  25.4    240 146 9   5   219 4   235 1.6e-10 57.8
input|c8|1205160-1205958|+|CDR20291_0987|septum MGC00000038|c1|12905-13670|+|RUMHYD_00316|CobQ/CobB/MinD/ParA_nucleotide_binding_domain_protein|EEG50801.1  24.4    238 144 7   6   216 3   231 1.2e-08 51.6
input|c8|1205160-1205958|+|CDR20291_0987|septum MGC00000040|c1|12229-13009|+|ctg1_731|NA|NA 21.8    262 168 7   6   239 3   255 9.2e-06 42.0
input|c9|1922515-1923838|+|CDR20291_1636|two-component  MGC00000011|c1|11092-12847|-|CLOST_RS11245|Fis_family_transcriptional_regulator|WP_013362446.1  35.8    438 256 12  19  439 151 580 1.0e-62 231.9
input|c9|1922515-1923838|+|CDR20291_1636|two-component  MGC00000025|c1|13623-15069|-|CLOPA_RS18875|sigma-54-dependent_Fis_family_transcriptional_regulator|WP_015617028.1   40.8    338 186 7   111 440 145 476 2.0e-61 227.6
input|c9|1924116-1925403|+|CDR20291_1637|sarcosine  MGC00000028|c1|9822-11115|+|CLOST_RS05750|glycine_reductase_complex_component_B_subunits_alpha_and_beta|WP_013361325.1  58.6    430 176 1   1   428 1   430 3.2e-157    545.8
input|c9|1925488-1926538|+|CDR20291_1638|sarcosine  MGC00000028|c1|11670-12981|+|CLOST_RS05760|glycine_reductase_complex_selenoprotein_B|WP_013361327.1 57.9    349 147 0   1   349 1   349 6.7e-121    424.9
input|c9|1932022-1932778|+|CDR20291_1644|putative   MGC0000002|c1|9194-9959|+|CLOSPO_02763|putative_CoA-substrate-specific_enzyme_activase|EDU36595.1   42.8    250 140 3   4   250 1   250 9.2e-56 208.0
input|c9|1932022-1932778|+|CDR20291_1644|putative   MGC0000004|c1|4708-5503|+|CLOSPO_00309|R-phenyllactate_dehydratase_activator|EDU39254.1 41.5    253 145 3   1   250 4   256 1.2e-55 207.6
input|c9|1932022-1932778|+|CDR20291_1644|putative   MGC00000014|c1|3016-3817|+|CD630_03960|2-hydroxyisocaproyl-CoA_dehydratase_activator|YP_001086862.2 40.3    253 148 3   1   250 1   253 1.6e-52 197.2
input|c9|1932022-1932778|+|CDR20291_1644|putative   MGC00000016|c1|29495-30275|+|CPRO_RS04095|2-hydroxyglutaryl-CoA_dehydratase|WP_066048110.1  39.2    255 148 4   1   250 1   253 2.6e-50 189.9
input|c9|1932022-1932778|+|CDR20291_1644|putative   MGC0000009|c1|6952-7756|+|HMPREF9474_RS14710|2-hydroxyglutaryl-CoA_dehydratase|WP_003501725.1   40.2    256 147 6   1   251 4   258 7.1e-48 181.8
input|c9|1952195-1956449|+|CDR20291_1664|conserved  MGC00000014|c1|3016-3817|+|CD630_03960|2-hydroxyisocaproyl-CoA_dehydratase_activator|YP_001086862.2 30.2    268 173 6   322 585 4   261 1.4e-28 120.2
input|c9|1952195-1956449|+|CDR20291_1664|conserved  MGC0000002|c1|9194-9959|+|CLOSPO_02763|putative_CoA-substrate-specific_enzyme_activase|EDU36595.1   30.9    262 167 6   322 579 1   252 1.9e-28 119.8
input|c9|1952195-1956449|+|CDR20291_1664|conserved  MGC0000004|c1|4708-5503|+|CLOSPO_00309|R-phenyllactate_dehydratase_activator|EDU39254.1 30.0    263 172 6   322 581 7   260 2.4e-28 119.4
input|c9|1952195-1956449|+|CDR20291_1664|conserved  MGC0000009|c1|6952-7756|+|HMPREF9474_RS14710|2-hydroxyglutaryl-CoA_dehydratase|WP_003501725.1   28.7    258 173 4   322 576 7   256 9.5e-25 107.5
input|c9|1952195-1956449|+|CDR20291_1664|conserved  MGC00000016|c1|29495-30275|+|CPRO_RS04095|2-hydroxyglutaryl-CoA_dehydratase|WP_066048110.1  29.3    259 173 5   322 578 4   254 3.4e-22 99.0
input|c10|2141834-2142965|+|CDR20291_1828|putative  MGC00000010|c1|13449-14562|+|STM2052|propanol_dehydrogenase|NP_460997.1 46.0    378 192 4   1   375 1   369 7.0e-84 302.0
input|c10|2141834-2142965|+|CDR20291_1828|putative  MGC0000003|c1|7412-8600|-|STM2461|ethanol_dehydrogenase_EutG|NP_461396.1    35.3    320 178 5   63  371 89  390 1.4e-44 171.4
input|c10|2143205-2143556|+|CDR20291_1829|putative  MGC00000010|c1|16470-16821|+|STM2055|propanediol_utilization_polyhedral_body_protein_PduU|NP_461000.1   63.2    114 41  1   3   116 4   116 1.9e-35 139.4
input|c10|2143205-2143556|+|CDR20291_1829|putative  MGC0000001|c1|5287-5641|+|CLOSPO_RS07640|propanediol_utilization_protein_PduU|WP_003485409.1    60.0    115 44  1   2   116 5   117 4.6e-34 134.8
input|c10|2143205-2143556|+|CDR20291_1829|putative  MGC0000003|c1|14557-14893|-|STM2470|carboxysome_structural_protein_EutS|NP_461405.1 51.8    112 52  1   5   116 2   111 9.9e-29 117.1
input|c10|2143563-2144013|+|CDR20291_1830|putative  MGC00000010|c1|16825-17278|+|STM2056|propanediol_utilization_protein_PduV|NP_461001.1   39.6    144 87  0   1   144 1   144 1.8e-27 113.2
input|c10|2143563-2144013|+|CDR20291_1830|putative  MGC0000003|c1|14065-14545|-|STM2469|ethanolamine_utilization_protein_EutP|NP_461404.1   31.7    142 95  2   1   140 1   142 9.7e-13 64.3
input|c10|2146275-2147709|+|CDR20291_1833|putative  MGC0000003|c1|4666-6070|-|STM2459|ethanolamine_utilization_protein_EutA|NP_461394.1 34.2    479 291 7   4   476 5   465 1.4e-68 251.5
input|c10|2147726-2149091|+|CDR20291_1834|putative  MGC0000003|c1|3293-4655|-|STM2458|ethanolamine_ammonia-lyase_large_subunit_EutB|NP_461393.1 59.9    451 181 0   1   451 1   451 3.1e-155    539.3
input|c10|2149103-2149985|+|CDR20291_1835|putative  MGC0000003|c1|2378-3275|-|STM2457|ethanolamine_ammonia-lyase_small_subunit_EutC|NP_461392.1 43.5    248 139 1   46  292 49  296 2.6e-54 203.4
input|c10|2150004-2150658|+|CDR20291_1836|putative  MGC0000003|c1|1709-2369|-|STM2456|carboxysome_structural_protein_EutL|NP_461391.1   55.9    211 93  0   4   214 5   215 3.0e-63 232.6
input|c10|2150668-2151370|+|CDR20291_1837|putative  MGC00000010|c1|8866-9142|+|STM2045|propanediol_utilization_polyhedral_body_protein_PduJ|NP_460990.1 53.4    88  41  0   2   89  3   90  1.5e-20 90.9
input|c10|2150668-2151370|+|CDR20291_1837|putative  MGC00000010|c1|2668-2953|+|STM2038|propanediol_utilization_polyhedral_body_protein_PduA|NP_460983.1 51.7    87  42  0   2   88  4   90  2.2e-19 87.0
input|c10|2150668-2151370|+|CDR20291_1837|putative  MGC0000003|c1|11254-11545|-|STM2465|carboxysome_structural_protein_EutM|NP_461400.1 48.8    82  42  0   1   82  1   82  1.0e-16 78.2
input|c10|2150668-2151370|+|CDR20291_1837|putative  MGC00000010|c1|15916-16471|+|STM2054|propanediol_utilization_polyhedral_body_protein_PduT|NP_460999.1   34.5    84  53  1   3   86  4   85  1.2e-06 44.7
input|c10|2151372-2152842|+|CDR20291_1838|putative  MGC0000001|c1|41-1523|+|CLOSPO_RS07625|acetaldehyde_dehydrogenase|WP_003485404.1    41.0    493 285 2   1   488 1   492 1.5e-107    380.9
input|c10|2151372-2152842|+|CDR20291_1838|putative  MGC00000010|c1|12043-13438|+|STM2051|CoA-dependent_propionaldehyde_dehydrogenase|NP_460996.1    28.8    358 246 6   54  410 77  426 3.6e-40 157.1
input|c10|2152937-2153225|+|CDR20291_1839|putative  MGC00000010|c1|8866-9142|+|STM2045|propanediol_utilization_polyhedral_body_protein_PduJ|NP_460990.1 80.5    87  17  0   5   91  3   89  3.2e-33 131.7
input|c10|2152937-2153225|+|CDR20291_1839|putative  MGC00000010|c1|2668-2953|+|STM2038|propanediol_utilization_polyhedral_body_protein_PduA|NP_460983.1 77.9    86  19  0   6   91  5   90  1.7e-31 125.9
input|c10|2152937-2153225|+|CDR20291_1839|putative  MGC0000003|c1|11254-11545|-|STM2465|carboxysome_structural_protein_EutM|NP_461400.1 72.9    85  23  0   6   90  3   87  7.3e-30 120.6
input|c10|2152937-2153225|+|CDR20291_1839|putative  MGC0000001|c1|0-4|+|CLOSPO_RS07620|hypothetical_protein|WP_003485402.1  54.8    93  40  1   1   91  1   93  9.0e-20 87.0
input|c10|2152937-2153225|+|CDR20291_1839|putative  MGC00000010|c1|15916-16471|+|STM2054|propanediol_utilization_polyhedral_body_protein_PduT|NP_460999.1   30.0    90  58  2   4   93  2   86  4.3e-06 41.6
input|c10|2153351-2154113|+|CDR20291_1840|putative  MGC0000003|c1|12598-13402|-|STM2467|cobalamin_adenosyltransferase_EutT|NP_461402.1  27.0    230 158 3   21  244 20  245 2.2e-17 80.5
input|c10|2154125-2154755|+|CDR20291_1841|putative  MGC00000010|c1|9627-10260|+|STM2047|phosphate_propanoyltransferase|NP_460992.1  45.4    196 104 3   2   196 3   196 3.9e-44 169.1
input|c10|2155534-2155807|+|CDR20291_1843|putative  MGC0000003|c1|10854-11142|-|STM2464|microcompartment_shell_protein_EutN|NP_461399.2 34.9    83  54  0   1   83  1   83  6.1e-10 54.3
input|c10|2155799-2156351|+|CDR20291_1844|putative  MGC00000010|c1|15916-16471|+|STM2054|propanediol_utilization_polyhedral_body_protein_PduT|NP_460999.1   33.2    184 121 2   1   183 1   183 1.7e-27 113.6
input|c10|2156350-2157454|+|CDR20291_1845|putative  MGC0000003|c1|6066-7293|-|STM2460|ethanolamine_transporter_EutH|NP_461395.1 52.3    394 150 5   5   360 1   394 3.4e-99 352.8
input|c10|2157455-2157929|+|CDR20291_1846|putative  MGC0000003|c1|13398-14088|-|STM2468|ethanolamine_utilization_protein_EutQ|NP_461403.1   36.0    150 90  3   8   155 83  228 1.2e-21 94.0
input|c11|2468059-2468599|-|CDR20291_2103|putative  MGC00000015|c1|2101-2632|+|CLOSPO_RS00750|2-oxoglutarate_ferredoxin_oxidoreductase_subunitgamma|WP_003483008.1  36.4    173 104 3   3   174 4   171 1.2e-30 124.0
input|c11|2468601-2469342|-|CDR20291_2104|putative  MGC00000015|c1|1350-2100|+|CLOSPO_RS00745|2-oxoglutarate_oxidoreductase|WP_003483007.1  41.6    238 139 0   9   246 10  247 8.1e-57 211.5
input|c11|2469343-2470393|-|CDR20291_2105|putative  MGC00000015|c1|280-1351|+|CLOSPO_RS00740|2-ketoisovalerate_ferredoxin_reductase|WP_003483006.1  44.5    355 180 8   2   343 4   354 2.5e-83 300.1
input|c11|2470409-2470646|-|CDR20291_2106|putative  MGC00000036|c1|9909-10260|-|Tph_c21310|putative_ech_hydrogenase_subunit_F|AFV12325.1    53.3    30  14  0   44  73  35  64  4.6e-06 41.2
input|c11|2470660-2471764|-|CDR20291_2107|putative  MGC00000027|c1|22614-23799|-|CLOST_RS02280|pyridoxal_phosphate-dependent_aminotransferase|WP_013360653.1    25.7    370 223 14  2   334 6   360 1.5e-17 81.6
input|c12|2615637-2616756|-|CDR20291_2227|NAD-dependent MGC0000003|c1|7412-8600|-|STM2461|ethanol_dehydrogenase_EutG|NP_461396.1    34.1    214 137 2   60  271 88  299 3.7e-29 120.2
input|c12|2615637-2616756|-|CDR20291_2227|NAD-dependent MGC00000010|c1|13449-14562|+|STM2052|propanol_dehydrogenase|NP_460997.1 30.5    226 137 3   59  280 62  271 8.6e-26 109.0
input|c12|2616775-2618083|-|CDR20291_2228|4-hydroxybutyrate MGC00000025|c1|10000-11302|-|CLOPA_RS18860|4-hydroxybutyrate_CoA-transferase|WP_080648393.1 60.8    436 167 3   1   435 1   433 3.7e-153    532.3
input|c12|2618516-2620013|-|CDR20291_2230|gamma-aminobutyrate   MGC00000025|c1|11873-13331|-|CLOPA_RS18870|aromatic_ring_hydroxylase|WP_015617027.1 71.6    493 132 1   1   493 1   485 1.8e-212    729.6
input|c12|2620205-2621597|-|CDR20291_2231|succinate-semialdehyde    MGC0000001|c1|41-1523|+|CLOSPO_RS07625|acetaldehyde_dehydrogenase|WP_003485404.1    30.2    440 304 2   11  448 9   447 2.4e-54 204.1
input|c12|2621627-2623172|-|CDR20291_2232|succinyl-CoA:coenzyme MGC00000022|c1|15271-16777|-|HMPREF1035_RS09355|acetyl-CoA_hydrolase|WP_004696497.1 57.3    499 211 2   9   506 4   501 7.2e-164    568.2
input|c12|2628178-2629324|-|CDR20291_2237|glycine/sarcosine/betaine MGC00000028|c1|14630-15797|+|CLOST_RS05775|glycine/betaine_reductase_C|WP_013361329.1   60.9    379 145 2   4   380 5   382 8.0e-128    448.0
input|c12|2629334-2630882|-|CDR20291_2238|glycine/sarcosine/betaine MGC00000028|c1|13078-14614|+|CLOST_RS05770|glycine/betaine_reductase_C|WP_013361328.1   64.0    506 180 2   6   509 1   506 5.8e-190    654.8
input|c12|2631384-2632434|-|CDR20291_2239|glycine   MGC00000028|c1|11670-12981|+|CLOST_RS05760|glycine_reductase_complex_selenoprotein_B|WP_013361327.1 70.2    349 104 0   1   349 1   349 7.3e-144    501.1
input|c12|2632465-2632939|-|CDR20291_2240|glycine/sarcosine/betaine MGC00000028|c1|11172-11649|+|CLOST_RS05755|Glycine_reductase_component_A_selenoprotein|WP_013361326.1   71.3    157 43  2   1   156 1   156 2.1e-58 216.1
input|c12|2633050-2634337|-|CDR20291_2241|glycine   MGC00000028|c1|9822-11115|+|CLOST_RS05750|glycine_reductase_complex_component_B_subunits_alpha_and_beta|WP_013361325.1  78.1    430 92  1   1   428 1   430 3.5e-204    701.8
input|c13|2716256-2717150|-|CDR20291_2316|phosphate MGC0000003|c1|16021-18301|-|STM2472|malic_enzyme|NP_461407.1    20.8    331 212 11  8   297 434 755 5.5e-07 46.2
input|c13|2717167-2718226|-|CDR20291_2317|butyrate  MGC00000030|c1|13406-14615|+|L960_3803|propionate/acetate_kinase|AIF63626.1 26.7    176 125 3   153 325 175 349 1.2e-13 68.6
input|c13|2718382-2718922|-|CDR20291_2318|putative  MGC00000015|c1|2101-2632|+|CLOSPO_RS00750|2-oxoglutarate_ferredoxin_oxidoreductase_subunitgamma|WP_003483008.1  40.6    175 99  2   4   178 5   174 2.6e-36 142.9
input|c13|2718934-2719654|-|CDR20291_2319|putative  MGC00000015|c1|1350-2100|+|CLOSPO_RS00745|2-oxoglutarate_oxidoreductase|WP_003483007.1  38.7    230 140 1   7   235 10  239 7.4e-47 178.3
input|c13|2719656-2720733|-|CDR20291_2320|putative  MGC00000015|c1|280-1351|+|CLOSPO_RS00740|2-ketoisovalerate_ferredoxin_reductase|WP_003483006.1  39.0    354 209 6   2   350 3   354 9.7e-67 245.0
input|c13|2720761-2720959|-|CDR20291_2321|putative  MGC00000015|c1|55-265|+|CLOSPO_RS00735|2-oxoacid:acceptor_oxidoreductase_subunit_delta|WP_003357528.1   45.7    46  25  0   1   46  1   46  4.6e-07 44.3
input|c14|3004805-3005708|-|CDR20291_2563|LysR-family   MGC00000030|c1|10000-10939|+|L960_3799|DNA-binding_transcriptional_activator_TdcA|AIF63622.1    21.7    258 198 3   4   261 10  263 4.8e-11 59.7
input|c14|3006062-3007241|+|CDR20291_2564|putative  MGC0000005|c1|1717-2896|+|CLOSPO_RS02080|acetyl-CoA_acetyltransferase|WP_003483430.1    63.0    392 144 1   1   392 1   391 1.3e-141    493.8
input|c14|3007905-3008571|+|CDR20291_2566|butyrate--acetoacetate    MGC00000017|c1|11135-12719|-|CXIVA_RS12695|acyl_CoA:acetate/3-ketoacid_CoA_transferase|WP_013978447.1   27.7    235 132 8   5   214 278 499 7.7e-14 68.6
input|c14|3007905-3008571|+|CDR20291_2566|butyrate--acetoacetate    MGC00000050|c1|10000-11575|+|AWO_RS08085|acyl_CoA:acetate/3-ketoacid_CoA_transferase|WP_014355955.1 29.0    162 90  6   4   155 275 421 1.2e-11 61.2
input|c14|3008669-3009452|+|CDR20291_2567|D-beta-hydroxybutyrate    MGC0000007|c1|4130-4880|+|bai4|3-alpha_hydroxysteroid_dehydrogenase|AAC45414.1  33.6    259 158 4   1   257 1   247 1.0e-33 134.8
input|c14|3008669-3009452|+|CDR20291_2567|D-beta-hydroxybutyrate    MGC0000008|c1|9262-10012|+|CLOSCI_03133|bile_acid_7-dehydroxylase_1/3|EDS05765.1    33.2    259 159 4   1   257 1   247 1.0e-33 134.8
input|c14|3012662-3016202|-|CDR20291_2570|pyruvate-flavodoxin   MGC00000033|c1|10000-13558|+|BT_1747|pyruvate-flavodoxin_oxidoreductase|AAO76854.1  60.6    1179    445 9   7   1178    9   1175    0.0e+00 1454.9
input|c14|3016719-3017289|-|CDR20291_2571|putative  MGC00000010|c1|9627-10260|+|STM2047|phosphate_propanoyltransferase|NP_460992.1  51.4    179 85  2   3   180 22  199 1.5e-47 180.3
input|c15|3522374-3524324|-|CDR20291_2962|predicted MGC0000007|c1|7678-9664|+|bai7|NADH:flavin_oxidoreductase|AAC45417.1    31.7    672 425 10  1   649 1   661 4.4e-86 310.1
input|c15|3522374-3524324|-|CDR20291_2962|predicted MGC0000008|c1|12808-14794|+|CLOSCI_03130|pyridine_nucleotide-disulfide_oxidoreductase|EDS05762.1    31.5    672 426 10  1   649 1   661 4.9e-85 306.6
input|c15|3522374-3524324|-|CDR20291_2962|predicted MGC0000008|c1|6765-8685|+|CLOSCI_03135|pyridine_nucleotide-disulfide_oxidoreductase|EDS05767.1  31.1    673 400 18  5   649 3   639 3.9e-66 243.8
input|c15|3522374-3524324|-|CDR20291_2962|predicted MGC0000007|c1|1633-3553|+|bai2|BaiCD|AAC45411.2 30.8    665 412 18  5   649 3   639 3.3e-65 240.7
input|c15|3522374-3524324|-|CDR20291_2962|predicted MGC00000040|c1|18306-19692|+|ctg1_737|NA|NA 26.7    247 157 8   375 608 32  267 1.6e-11 62.4
input|c15|3540431-3541319|-|CDR20291_2975|AraC-family   MGC0000008|c1|3670-4903|-|CLOSCI_03137|transcriptional_regulator,_AraC_family|EDS05769.1    29.8    94  66  0   190 283 193 286 3.8e-08 50.1
input|c15|3545963-3546842|-|CDR20291_2979|putative  MGC00000051|c1|16150-17155|-|BT_1691|fructose-bisphosphate_aldolase|AAO76798.1  32.8    326 174 6   2   284 9   332 5.0e-45 172.6
input|c16|3692328-3693636|-|CDR20291_3092|conserved MGC00000030|c1|20415-21726|+|L960_3808|hypothetical_protein|AIF63631.1  39.5    418 249 3   12  428 17  431 3.4e-74 270.0
input|c16|3694060-3695836|-|CDR20291_3093|putative  MGC00000011|c1|11092-12847|-|CLOST_RS11245|Fis_family_transcriptional_regulator|WP_013362446.1  39.0    454 258 9   152 589 130 580 8.7e-81 292.4
input|c16|3694060-3695836|-|CDR20291_3093|putative  MGC00000025|c1|13623-15069|-|CLOPA_RS18875|sigma-54-dependent_Fis_family_transcriptional_regulator|WP_015617028.1   36.3    477 271 8   116 587 25  473 1.3e-68 251.9
input|c16|3698103-3698985|-|CDR20291_3096|putative  MGC00000011|c1|3319-4195|-|CLOST_RS11200|permease|WP_013362438.1    56.8    292 122 3   1   292 1   288 1.1e-79 287.7
input|c16|3699104-3700112|-|CDR20291_3097|putative  MGC00000011|c1|4258-5266|-|CLOST_RS11205|proline_racemase|WP_013362439.1    69.7    333 100 1   1   332 1   333 1.8e-139    486.5
input|c16|3700131-3700614|-|CDR20291_3098|conserved MGC00000011|c1|5262-5733|-|CLOST_RS11210|proline_reductase|WP_041487206.1   49.4    154 75  2   4   156 1   152 4.1e-41 158.7
input|c16|3700631-3701099|-|CDR20291_3099|conserved MGC00000011|c1|5262-5733|-|CLOST_RS11210|proline_reductase|WP_041487206.1   74.3    152 39  0   1   152 1   152 9.3e-67 243.8
input|c16|3701113-3701872|-|CDR20291_3100|conserved MGC00000011|c1|5748-6513|-|CLOST_RS11215|proline_reductase_cluster_protein_PrdD|WP_013362441.1  53.4    247 115 0   6   252 8   254 4.9e-73 265.4
input|c16|3701113-3701872|-|CDR20291_3100|conserved MGC00000011|c1|7589-9479|-|CLOST_RS11235|D-proline_reductase_proprotein_PrdA|WP_013362444.1 43.3    252 142 1   2   252 173 424 3.5e-55 206.1
input|c16|3701951-3702677|-|CDR20291_3101|proline   MGC00000011|c1|6850-7297|-|CLOST_RS11225|proline_reductase|WP_041487512.1   75.0    148 37  0   3   150 1   148 1.4e-64 237.3
input|c16|3701951-3702677|-|CDR20291_3101|proline   MGC00000011|c1|6577-6823|-|CLOST_RS11220|proline_reductase|WP_041487207.1   84.0    81  13  0   160 240 1   81  3.6e-33 132.9
input|c16|3702714-3702999|-|CDR20291_3102|hypothetical  MGC00000011|c1|7298-7559|-|CLOST_RS11230|hypothetical_protein|WP_013362443.1    50.0    84  42  0   4   87  1   84  5.7e-19 84.3
input|c16|3703079-3704960|-|CDR20291_3103|proline   MGC00000011|c1|7589-9479|-|CLOST_RS11235|D-proline_reductase_proprotein_PrdA|WP_013362444.1 71.7    632 169 5   1   625 1   629 5.2e-241    824.7
input|c16|3703079-3704960|-|CDR20291_3103|proline   MGC00000011|c1|5748-6513|-|CLOST_RS11215|proline_reductase_cluster_protein_PrdD|WP_013362441.1  35.9    251 155 2   172 420 8   254 5.0e-42 163.7
input|c16|3703079-3704960|-|CDR20291_3103|proline   MGC00000011|c1|5262-5733|-|CLOST_RS11210|proline_reductase|WP_041487206.1   46.4    151 81  0   422 572 3   153 3.0e-39 154.5
input|c16|3705388-3707179|-|CDR20291_3104|sigma-54-dependent    MGC00000011|c1|11092-12847|-|CLOST_RS11245|Fis_family_transcriptional_regulator|WP_013362446.1  43.5    579 315 6   19  592 10  581 1.4e-123    434.5
input|c16|3705388-3707179|-|CDR20291_3104|sigma-54-dependent    MGC00000025|c1|13623-15069|-|CLOPA_RS18875|sigma-54-dependent_Fis_family_transcriptional_regulator|WP_015617028.1   40.9    457 246 12  149 590 27  474 1.9e-75 274.6
input|c16|3707949-3709263|-|CDR20291_3105|putative  MGC00000011|c1|9622-10801|-|CLOST_RS11240|proline_reductase-associated_electron_transfer_protein_PrdC|WP_041487208.1    53.4    388 179 2   7   393 6   392 9.8e-122    427.9
input|c16|3707949-3709263|-|CDR20291_3105|putative  MGC00000037|c1|13606-14950|-|CLOSPO_00573|electron_transport_complex,_RnfABCDGE_type,_C_subunit|EDU37758.1  35.0    346 196 7   9   328 45  387 6.1e-47 179.5
input|c16|3707949-3709263|-|CDR20291_3105|putative  MGC00000010|c1|14558-15914|+|STM2053|propanediol_utilization_polyhedral_body_protein_PduS|NP_460998.1   32.7    327 190 10  74  395 12  313 1.8e-38 151.4
input|c16|3707949-3709263|-|CDR20291_3105|putative  MGC00000038|c1|31560-33492|+|RUMHYD_00332|4Fe-4S_binding_domain_protein|EEG50719.1  26.4    280 157 9   77  307 199 478 8.3e-12 62.8
input|c17|3747695-3750452|-|CDR20291_3141|putative  MGC00000011|c1|11092-12847|-|CLOST_RS11245|Fis_family_transcriptional_regulator|WP_013362446.1  26.7    296 178 13  85  367 251 520 2.1e-17 82.4
input|c17|3751049-3751853|-|CDR20291_3142|pyrroline-5-carboxylate   MGC00000039|c1|13607-14411|+|ctg22_33|NA|NA 99.3    267 2   0   1   267 1   267 7.3e-128    447.6
input|c17|3752177-3754547|-|CDR20291_3143|putative  MGC00000039|c1|10913-13283|+|ctg22_32|NA|NA 99.7    789 2   0   1   789 1   789 0.0e+00 1619.4
input|c17|3752177-3754547|-|CDR20291_3143|putative  MGC0000001|c1|1572-4113|+|CLOSPO_RS07630|choline_trimethylamine-lyase|WP_042384851.1    34.0    802 498 14  4   788 57  844 2.8e-119    420.6
input|c17|3752177-3754547|-|CDR20291_3143|putative  MGC00000041|c1|15992-18629|+|AUL39_03420|formate_acetyltransferase|KUH59380.1   29.5    852 510 26  7   786 42  874 1.2e-98 352.1
input|c17|3752177-3754547|-|CDR20291_3143|putative  MGC00000043|c1|11091-13611|-|CXZ00_12390|Phenylacetate_decarboxylase|PSH03431.1 29.8    823 523 18  7   789 32  839 1.7e-95 341.7
input|c17|3752177-3754547|-|CDR20291_3143|putative  MGC00000031|c1|10000-12232|+|CA_C0980|Pyruvate-formate_lyase|AAK78956.1 23.9    602 394 13  196 785 189 738 5.8e-40 157.1
input|c17|3754551-3755460|-|CDR20291_3144|putative  MGC00000039|c1|10000-10909|+|ctg22_31|NA|NA 99.7    302 1   0   1   302 1   302 3.2e-164    568.5
input|c17|3754551-3755460|-|CDR20291_3144|putative  MGC0000001|c1|4294-5248|+|CLOSPO_RS07635|choline_TMA-lyase-activating_enzyme|WP_003494063.1 40.3    303 171 4   5   300 15  314 7.7e-57 211.8
input|c17|3754551-3755460|-|CDR20291_3144|putative  MGC00000043|c1|10000-10948|-|CXZ00_12385|Phenylacetate_decarboxylase_activating_enzyme|PSH03430.1   38.3    308 178 5   4   302 9   313 5.0e-56 209.1
input|c17|3754551-3755460|-|CDR20291_3144|putative  MGC00000041|c1|20190-21138|+|AUL39_03430|glycyl_radical-activating_protein|KUH59382.1   31.6    304 193 5   1   293 8   307 5.1e-45 172.6
input|c17|3754551-3755460|-|CDR20291_3144|putative  MGC00000012|c1|3180-4131|+|CD630_01550|4-hydroxyphenylacetate_decarboxylase_activating_subunit_HpdA|YP_001086624.1  32.8    296 187 6   4   291 10  301 2.4e-42 163.7
input|c17|3754551-3755460|-|CDR20291_3144|putative  MGC00000044|c1|10000-10741|-|b0902|pyruvate_formate-lyase_activating_enzyme|AAC73988.1  27.7    289 147 6   7   292 9   238 5.5e-31 125.9
input|c17|3754551-3755460|-|CDR20291_3144|putative  MGC00000031|c1|12242-12956|+|CA_C0981|Pyruvate-formate-lyase-activating_enzyme|AAK78957.1   27.0    274 125 8   7   272 6   212 1.7e-27 114.4

Any suggestions on how I can reproduce the website's output? Thanks!

[mmpust]

To anyone experiencing the same issue, the following steps helped to solve the problem:

1. python run_gutsmash.py allows you to specify --verbose,--debug and --logfile to track potential issues.
   
   
2. Check that you have matching diamond database versions in gutsmash/antismash/modules/clusterblast/data/known and gutsmash/antismash/databases/clusterblast with diamond dbinfo --db proteins.dmnd.
   
   
3. When using the web server with your own input, do not press the button load sample input. This is always overwriting your own GBK file with an example GBK file. Even when you correctly upload your GBK file by clicking on choose file afterwards.