search

victoriapascal / gutsmash

gutSMASH
GNU Affero General Public License v3.0
50 stars 15 forks source link

Docker file #15

Open nmendozam opened 9 months ago

nmendozam commented 9 months ago

Add the recipe to build a docker image of this package. This might as well partially solve the issue #7 by defining the versions in docker/env.yaml

nmendozam commented 9 months ago

The docker image is available in docker hub

PabloArrow commented 8 months ago

how is it possible to install/run gutsmash on mac m1? most of the required software is out of date or presents incompatibility issues.

nmendozam commented 7 months ago

If I recall correctly docker uses rosetta by default in m1 processors. Thus you could simply run gutsmash with docker:

docker excec nmendozam/gutsmash  run_gutsmash.py -h

Remember to mount your working directory to the docker image, that way gutsmash can access the input file and save the output in the host machine (your machine):

docker excec -v `pwd`:/tmp nmendozam/gutsmash run_gutsmash.py --minimal gbk_input_file