Note: This is an example of strategy submission in the EteRNA Strategy Market
My strategy is to look at the percentage of GC pairs in the design. I think that a large number of GC pairs would prevent the secondary structure from switching states. Based on this, I would penalize designs that have more than 40% GC pairs and award designs that have less than 40% GC pairs but more than 20% GC pairs.
vineetsk1
commented
9 years ago
Original Author: vineetkosaraju Original Link: https://getsatisfaction.com/eternagame/topics/-strategy-market-switch-penalize-large-amounts-of-gc-pairs
Note: This is an example of strategy submission in the EteRNA Strategy Market
My strategy is to look at the percentage of GC pairs in the design. I think that a large number of GC pairs would prevent the secondary structure from switching states. Based on this, I would penalize designs that have more than 40% GC pairs and award designs that have less than 40% GC pairs but more than 20% GC pairs.
Please implement my strategy!