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viniciusmaracaja / structRNAfinder

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cannot execute binary file #4

Open hnt001 opened 2 years ago

hnt001 commented 2 years ago

Hello,

I have the following error: 

/usr/local/bin/cmscan: /usr/local/bin/cmscan: cannot execute binary file
readline() on closed filehandle IN at /usr/local/bin/SRF_infernal2table line 83.
Can't open the file [Rfam.cm] at /usr/local/bin/SRF_extractMAture line 44.
Can't locate Bio/Graphics.pm in @INC (you may need to install the Bio::Graphics module) (@INC contains: /Users/teklelab/perl5/lib/perl5/darwin-thread-multi-2level /Users/teklelab/perl5/lib/perl5 /Library/Perl/5.18/darwin-thread-multi-2level /Library/Perl/5.18 /Network/Library/Perl/5.18/darwin-thread-multi-2level /Network/Library/Perl/5.18 /Library/Perl/Updates/5.18.4 /System/Library/Perl/5.18/darwin-thread-multi-2level /System/Library/Perl/5.18 /System/Library/Perl/Extras/5.18/darwin-thread-multi-2level /System/Library/Perl/Extras/5.18 .) at /usr/local/bin/SRF_generateHTML line 10.
BEGIN failed--compilation aborted at /usr/local/bin/SRF_generateHTML line 10.

I am using MacOS, is it because the cmscan is only executable on Lunix system?

cement-head commented 3 months ago

No, I do not think you're issue is because of MAC O/S, PERL should be universal (work on any O/S). The error message indicates that you are missing a PERL module

Try:

$ cpan install Bio::Graphics

You are missing a PERL module: https://metacpan.org/pod/Bio::Graphics