Closed francesco-ricci closed 1 year ago
Hi @francesco-ricci,
Thank you for reporting this issue. Apparently this is a downstream problem of https://github.com/BinPro/CONCOCT/issues/321.
It was fixed by 7597983cdf2b3fafdbe3b6019091f8fc0100ca0a which is included in the current version v1.7.1
.
Best, Vini
Hello,
I am having an issue when metaphor runs concoct:
Up and running. Check /data/francesco/analyses/deepsea_coral/cyano_project/metagenome_analysis/metaphorCallorgia/output/binning/concoct/cobinning/log.txt for$ Traceback (most recent call last): File "/data/francesco/metaphor/metaphor/config/conda/9d03e8773574f76122db090afb085ec4/bin/concoct", line 90, in
results = main(args)
File "/data/francesco/metaphor/metaphor/config/conda/9d03e8773574f76122db090afb085ec4_/bin/concoct", line 37, in main
transform_filter, pca = performpca(
File "/data/francesco/metaphor/metaphor/config/conda/9d03e8773574f76122db090afb085ec4/lib/python3.10/site-packages/concoct/transform.py", line 5, in perfor$
pca_object = PCA(n_components=nc, randomstate=seed).fit(d)
File "/data/francesco/metaphor/metaphor/config/conda/9d03e8773574f76122db090afb085ec4/lib/python3.10/site-packages/sklearn/decomposition/_pca.py", line 435$
self.fit(X)
File "/data/francesco/metaphor/metaphor/config/conda/9d03e8773574f76122db090afb085ec4/lib/python3.10/site-packages/sklearn/decomposition/_pca.py", line 485$
X = self._validatedata(
File "/data/francesco/metaphor/metaphor/config/conda/9d03e8773574f76122db090afb085ec4/lib/python3.10/site-packages/sklearn/base.py", line 518, in _validate$
self._check_featurenames(X, reset=reset)
File "/data/francesco/metaphor/metaphor/config/conda/9d03e8773574f76122db090afb085ec4/lib/python3.10/site-packages/sklearn/base.py", line 385, in _check_fe$
feature_names_in = _get_featurenames(X)
File "/data/francesco/metaphor/metaphor/config/conda/9d03e8773574f76122db090afb085ec4/lib/python3.10/site-packages/sklearn/utils/validation.py", line 1893,$
raise TypeError(
TypeError: Feature names are only supported if all input features have string names, but your input has ['int', 'str'] as feature name / column name types. If$
Thanks for your help!