.log file problem - Githubissues

vinuesa / get_phylomarkers

A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches

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.log file problem #19

Open SebastianRivero99 opened 2 weeks ago

SebastianRivero99 commented 2 weeks ago

I recently used the GET:PHYLOMARKER program but when running the command "run_get_phylomarkers_pipeline.sh -R 1 -t DNA" in the core directory on the screen it appeared that some sequences were discarded, however checking the .log file this error does not appear, I send you the log file is "nohup,out" plus the photo where the log is compared vs what was printed on the screen when running the process. I attached the log file here nohup.txt image (1)

eead-csic-compbio commented 2 weeks ago

Hi @SebastianRivero99 , can you please share a couple of example input .faa & .fna files?