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virajbdeshpande / AmpliconArchitect

AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and elucidates the architecture of the amplicon. In the current version, AA takes as input next generation sequencing reads (paired-end Illumina reads) mapped to the hg19/GRCh37 reference sequence and one or more regions of interest. Please "watch" this repository for improvements in runtime, accuracy and annotations for GRCh38 human reference genome coming up soon.
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How to get AA data repo? #109

Closed najoshi closed 2 years ago

najoshi commented 2 years ago

How do I get access to the google drive to download the data repo? Is it necessary to have the data repo to run AA?

virajbdeshpande commented 2 years ago

Please use this link: https://drive.google.com/drive/folders/0ByYcg0axX7udeGFNVWtaUmxrOFk?resourcekey=0-WW7hTVXmgiBIsiwMP14ERA It was recently updated in the README

On Tue, Oct 12, 2021 at 3:41 AM najoshi @.***> wrote:

How do I get access to the google drive to download the data repo? Is it necessary to have the data repo to run AA?

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najoshi commented 2 years ago

Cool, thanks. For some reason, when I tried it before, it said I had to request access to it.