AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and elucidates the architecture of the amplicon. In the current version, AA takes as input next generation sequencing reads (paired-end Illumina reads) mapped to the hg19/GRCh37 reference sequence and one or more regions of interest. Please "watch" this repository for improvements in runtime, accuracy and annotations for GRCh38 human reference genome coming up soon.
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Instruction for preparing non-human reference genome? #94
I was wondering if it is possible to release an instruction on preparing non-human reference genome for AA. I found a similar request on Github (https://github.com/virajbdeshpande/AmpliconArchitect/issues/54) but there seems not much updates on this since then.
Dear developers,
I was wondering if it is possible to release an instruction on preparing non-human reference genome for AA. I found a similar request on Github (https://github.com/virajbdeshpande/AmpliconArchitect/issues/54) but there seems not much updates on this since then.
Thanks in advance!
Best, Jia-Xing