viralemergence / virion

The Global Virome in One Network
https://viralemergence.github.io/virion
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Usage of Virus genome/protein in VIRION #69

Open JY-97 opened 2 years ago

JY-97 commented 2 years ago

Fully respect the awesome and laborious work in VIRION database! I am trying to use the genomic information along with the virus records, however, I found some obstacles and looking for your kindly help:

  1. highly inconsistent accession number for the same virus taxids (also, there are gi numbers). I understand that is resulted from the original records and the heterogeneous data sources.
  2. about 70% of the virus taxids did not have a complete genome record from RefSeq of Genbank. Is there any recommendation solution for parsering those incomplete viruses?
  3. segmented viruses make genomic information curation work harder. Inclosing that information would be of great help.