Phase III Lab/Experiment(s) OnBoarding Request for Biosignal Processing and Analysis Lab AU

[amritamindbrain]

Lab Name: Biosignal Processing and Analysis Lab Department: Biotechnology and Biomedical Engineering

List of Experiments and Repositories:

1: Bio signal import and channel analysis - https://github.com/virtual-labs/exp-channel-analysis-au, Master Branch, v1.0

2: Time Frequency Analysis of Bio signals - https://github.com/virtual-labs/exp-analysis-biosignals-au, Master Branch, v1.0

3: Point processes and models - https://github.com/virtual-labs/exp-point-processes-au, Master Branch, v1.0

List of proposed experiments to be updated under Biosignal Processing and Analysis Lab: (require server support)

1: Temporal structure in EEG - https://github.com/virtual-labs/exp-eeg-au

2. Filtering and removal of artifacts in Biosignals - https://github.com/virtual-labs/exp-artifacts-biosignals-au

3. Motor unit firing pattern - https://github.com/virtual-labs/exp-firing-pattern-au

4. Modeling network activity as in biological circuit s - https://github.com/virtual-labs/exp-biological-circuits-au

5. Modeling synaptic network connectivity - https://github.com/virtual-labs/exp-network-connectivity-au

6. Reconstructing averaged population response - https://github.com/virtual-labs/exp-population-response-au

7. Power spectrum calculations using different windows - https://github.com/virtual-labs/exp-power-spectrum-calculations-au

8. Study the changes in the PSDs by varying window width - https://github.com/virtual-labs/exp-study-psds-au

9. Analysis of biosignal activity and artifacts - https://github.com/virtual-labs/exp-biosignal-activity-artifacts-au

Introduction: This lab provides a platform for EEG data analysis and visualization for understanding the correlations of neural activity through electroencephalography data. Experiments designed in this lab help student communities to acquire expertise on fundamental tools that were necessary to describe, analyze and process common biological signals. With the recent trends of interest from computational neuroscience research, the experimental strategies were featured with models of neurons to understand general properties of neural networks and to graphically visualize how biological neurons work with computational efficiency. The lab focuses on an open-source signal analysis platform that can also be extended by students from across the internet.

Objectives:

1. To describe, analyze and process common biological signals.
2. Processing EEG signals and specific events to analyze and classify event-driven variations with specific focus on underlying neural activity.
3. To study basics of neuron models for understanding precise spiking behaviors, similar to the biological neurons
4. To understand the computational basics of neural properties that drive network dynamics in large scale computational models.
5. To study how single neuron can be scaled to replicate a network activity with different synaptic connections with neuron models.

Course Alignment:

UG in Biotechnology/Microbiology/Bioinformatics/Biomedical Science PG in Biotechnology/Microbiology/Bioinformatics/Biomedical Science B.Tech./ B.E in Biotechnology

Universities Mapped :

Anna University Tamil Nadu Visvesvaraya Technological University Karnataka Jawaharlal Nehru Technological University Telangana University of Calicut Kerala University of Kerala Senate House Campus Kerala

Target Audience: (1) UG (2) PG (3) PhD/Research Scholars (4) B Tech (5) M Tech

[pavanchow]

@amritamindbrain Could please use semantic versioning for tagging? can you please create tag v1.0.0 for the experiments which need to be hosted.

[amritamindbrain]

Lab Name: Biosignal Processing and Analysis Lab Department: Biotechnology and Biomedical Engineering

List of Experiments and Repositories:

1: Bio signal import and channel analysis - https://github.com/virtual-labs/exp-channel-analysis-au, Master Branch, v1.0.0 2: Time Frequency Analysis of Bio signals - https://github.com/virtual-labs/exp-analysis-biosignals-au, Master Branch, v1.0.0 3: Point processes and models - https://github.com/virtual-labs/exp-point-processes-au, Master Branch, v1.0.0

4. Analysis of biosignal activity and artifacts - https://github.com/virtual-labs/exp-biosignal-activity-artifacts-au, Master Branch, v1.0.0
5. Filtering and removal of artifacts in Biosignals - https://github.com/virtual-labs/exp-artifacts-biosignals-au, Master Branch, v1.0.0
6. Power spectrum calculations using different windows - https://github.com/virtual-labs/exp-power-spectrum-calculations-au, Master Branch, v1.0.0
7. Study the changes in the PSDs by varying window width - https://github.com/virtual-labs/exp-study-psds-au, Master Branch, v1.0.0
   

List of proposed experiments to be updated under Biosignal Processing and Analysis Lab: (require server support)

1: Temporal structure in EEG - https://github.com/virtual-labs/exp-eeg-au

2. Motor unit firing pattern - https://github.com/virtual-labs/exp-firing-pattern-au
3. Modeling network activity as in biological circuits - https://github.com/virtual-labs/exp-biological-circuits-au
4. Modeling synaptic network connectivity - https://github.com/virtual-labs/exp-network-connectivity-au
5. Reconstructing averaged population response - https://github.com/virtual-labs/exp-population-response-au

Introduction: This lab provides a platform for EEG data analysis and visualization for understanding the correlations of neural activity through electroencephalography data. Experiments designed in this lab help student communities to acquire expertise on fundamental tools that were necessary to describe, analyze and process common biological signals. With the recent trends of interest from computational neuroscience research, the experimental strategies were featured with models of neurons to understand general properties of neural networks and to graphically visualize how biological neurons work with computational efficiency. The lab focuses on an open-source signal analysis platform that can also be extended by students from across the internet.

Objectives:

1. To describe, analyze and process common biological signals.
2. Processing EEG signals and specific events to analyze and classify event-driven variations with specific focus on underlying neural activity.
3. To study basics of neuron models for understanding precise spiking behaviors, similar to the biological neurons
4. To understand the computational basics of neural properties that drive network dynamics in large scale computational models.
5. To study how single neuron can be scaled to replicate a network activity with different synaptic connections with neuron models.

Course Alignment:

UG in Biotechnology/Microbiology/Bioinformatics/Biomedical Science PG in Biotechnology/Microbiology/Bioinformatics/Biomedical Science B.Tech./ B.E in Biotechnology

Universities Mapped :

Anna University Tamil Nadu Visvesvaraya Technological University Karnataka Jawaharlal Nehru Technological University Telangana University of Calicut Kerala University of Kerala Senate House Campus Kerala

Target Audience: (1) UG (2) PG (3) PhD/Research Scholars (4) B Tech (5) M Tech

[pavanchow]

@amritamindbrain

Hosted Biosignal Processing and Analysis Lab with JavaScript experiments URL of Lab: https://bpa-au.vlabs.ac.in/ Branch: Master

Please check and approve

[amritamindbrain]

Verified. Lets proceed

[amritamindbrain]

awaiting the update

[BalammaBoya]

@pavanchow Request to rehost the lab:

This issue also is used to host labs and their experiments that have been migrated Pretest and Posttest questions from ".js" format to ".json" format and updated .yml file.

1: Bio signal import and channel analysis - https://github.com/virtual-labs/exp-channel-analysis-au, main Branch, v1.0.1 2: Time Frequency Analysis of Bio signals - https://github.com/virtual-labs/exp-analysis-biosignals-au, main Branch, v1.0.1 3: Point processes and models - https://github.com/virtual-labs/exp-point-processes-au, main Branch, v1.0.1

4. Analysis of biosignal activity and artifacts - https://github.com/virtual-labs/exp-biosignal-activity-artifacts-au, main Branch, v1.0.1
5. Filtering and removal of artifacts in Biosignals - https://github.com/virtual-labs/exp-artifacts-biosignals-au, main Branch, v1.0.1
6. Power spectrum calculations using different windows - https://github.com/virtual-labs/exp-power-spectrum-calculations-au, main Branch, v1.0.1
7. Study the changes in the PSDs by varying window width - https://github.com/virtual-labs/exp-study-psds-au, main Branch, v1.0.1

Note : The following experiments repo created but didn't hosted on the production currently/as today.

List of proposed experiments to be updated under Biosignal Processing and Analysis Lab: (require server support)

1: Temporal structure in EEG - https://github.com/virtual-labs/exp-eeg-au

2. Motor unit firing pattern - https://github.com/virtual-labs/exp-firing-pattern-au
3. Modeling network activity as in biological circuits - https://github.com/virtual-labs/exp-biological-circuits-au
4. Modeling synaptic network connectivity - https://github.com/virtual-labs/exp-network-connectivity-au
5. Reconstructing averaged population response - https://github.com/virtual-labs/exp-population-response-au

[pavanchow]

@BalammaBoya Hosted Biosignal Processing and Analysis Lab with mentioned experiment tags URL of Lab: https://bpa-au.vlabs.ac.in/

Please check and approve

[amritamindbrain]

@BalammaBoya @pavanchow we have updated the remaining experiments. Proceed with onboarding.

[pavanchow]

@amritamindbrain Could you please comment experiment name, URL, and tags of the experiments that need to be hosted?

[amritamindbrain]

1: Temporal structure in EEG - (https://github.com/virtual-labs/exp-eeg-au), main Branch, v1.0.0

2. Motor unit firing pattern - https://github.com/virtual-labs/exp-firing-pattern-au, main Branch, v1.0.0

3. Modeling network activity as in biological circuits - https://github.com/virtual-labs/exp-biological-circuits-au, main Branch, v1.0.0

4. Modeling synaptic network connectivity - https://github.com/virtual-labs/exp-network-connectivity-au, main Branch, v1.0.0

5. Reconstructing averaged population response - https://github.com/virtual-labs/exp-population-response-au, main Branch, v1.0.0

[pavanchow]

@amritamindbrain Hosted Biosignal Processing and Analysis Lab with mentioned experiments URL of Lab: https://bpa-au.vlabs.ac.in/

Please check and approve

[pavanchow]

@amritamindbrain Hosted Biosignal Processing and Analysis Lab with mentioned experiments URL of Lab: https://bpa-au.vlabs.ac.in/

Please check and approve

[amritamindbrain]

Checked. Please proceed with hosting process

[amritamindbrain]

@pavanchow please host the experiments.

[pavanchow]

@amritamindbrain The lab is already hosted with all 12 experiments,

[amritamindbrain]

@pavanchow please rehost the following lab:

Temporal structure in EEG

[pavanchow]

@amritamindbrain Could you please create a tag for the experiment? The deployment process requires a tag for deploying experiments. https://github.com/virtual-labs/engineers-forum/issues/683#issuecomment-890505936

[amritamindbrain]

@amritamindbrain Could you please create a tag for the experiment? The deployment process requires a tag for deploying experiments. #683 (comment)

Created. [https://github.com/virtual-labs/exp-eeg-au] v1.0.4

Thankyou.

[pavanchow]

@amritamindbrain Hosted Biosignal Processing and Analysis Lab with mentioned experiment URL of Lab: https://bpa-au.vlabs.ac.in/

Please check and approve

[ravikiran2020]

Rehosting the lab with Bug Report and Rating Feature