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virtualcell
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vcell
Virtual Cell Framework
http://vcell.org/
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Fixes bug where logs do not properly get updated in significant size simulations.
#1394
CodeByDrescher
opened
7 hours ago
0
Updated KiSAO OBO and added parsing for KiSAO_694
#1393
CodeByDrescher
opened
3 days ago
0
OMEX Execution fails with repeated task of size 1
#1392
jcschaff
closed
4 days ago
0
Links are now editable
#1391
danv61
closed
4 days ago
0
use Tracer for additional observability into OMEX execution failures
#1390
jcschaff
closed
4 days ago
0
Story: Transition Field Data RPC To a RESTful Endpoint and Fix Bugs
#1389
AvocadoMoon
opened
4 days ago
0
Auth0 Token Retrieval Documentation
#1388
AvocadoMoon
closed
4 days ago
0
Redesign the springsalad-specific user interface
#1387
danv61
closed
5 days ago
0
Fixes to vcell-cli-utils
#1386
CodeByDrescher
closed
4 days ago
0
Add option for automatic n5 export of spatial siulations
#1385
CodeByDrescher
opened
6 days ago
0
Give Dedicated Submit Node to VCell (and/ or give more inteligent code to select submit nodes)
#1384
CodeByDrescher
opened
6 days ago
0
Added convenience methods to JhdfUtils
#1383
CodeByDrescher
closed
6 days ago
0
Odic deploy fix
#1382
CodeByDrescher
closed
1 week ago
0
support Infinity and NaN in SBML values and MathML
#1381
jcschaff
closed
1 week ago
0
Generation of Observables takes a long time
#1380
danv61
closed
1 week ago
0
properly report different jumpprocesses in math description
#1379
jcschaff
closed
1 week ago
0
Series of changes to get BSTS to approve of 7.7 Container
#1378
CodeByDrescher
closed
1 week ago
0
Attempting to enforce needed permissions
#1377
CodeByDrescher
closed
2 weeks ago
0
Sed ml export repair
#1376
CodeByDrescher
closed
2 weeks ago
0
Auth0 Browser Pop-Up
#1375
AvocadoMoon
opened
2 weeks ago
1
Replace unsupported legacy native hdf5 library
#1374
jcschaff
closed
1 week ago
0
On windows, the omex manifest entry for metadata uses an incorrect path separator character
#1373
CodeByDrescher
closed
3 weeks ago
0
Fixed bug where if windows OS, omex manifest would contain bad separator
#1372
CodeByDrescher
closed
3 weeks ago
0
use pure-java io.jhdf library for nonspatial HDF5 file writing while executing omex archives.
#1371
jcschaff
closed
3 weeks ago
0
Create instructions for users within dialog(s) on how to convert to OME-TIFF to import images, while preserving all useful information
#1370
CodeByDrescher
opened
1 month ago
0
mangle reserved SBML reaction names, e.g. x becomes RESERVED_x
#1369
jcschaff
closed
1 month ago
0
accommodated structure name in sbml model import, passes BIOMD00..0071
#1368
jcschaff
closed
1 month ago
0
Fix Incapability to Export Locally Loaded Simulation Results
#1367
AvocadoMoon
closed
2 weeks ago
0
accommodate missing ClientTaskStatusSupport while reading images
#1366
jcschaff
closed
1 month ago
0
VCell Client Update appears after login looses focus with auth0 login
#1365
jimschaff
opened
1 month ago
0
Export Service Implementation Holding Old State
#1364
AvocadoMoon
closed
1 month ago
0
Exporting N5 Discrepancies
#1363
AvocadoMoon
closed
1 month ago
0
Membrane Langevin jump processes not loading from VCML #1361
#1362
danv61
closed
1 month ago
0
Membrane Langevin jump processes not loading from VCML
#1361
danv61
closed
1 month ago
3
Dan ss bound transition
#1360
danv61
closed
2 months ago
0
simplified Slurm scripts, uses vcell-solvers and vcell-fvsolver containers
#1359
jcschaff
closed
1 month ago
0
Human Readable Passes Dimension Info to its Spec
#1358
AvocadoMoon
closed
2 months ago
0
Improve n5 experience
#1357
AvocadoMoon
closed
2 months ago
0
Improve N5 Experience
#1356
AvocadoMoon
closed
2 months ago
0
Perform Generalized Stochastic simulations from non-mass action reactions
#1355
jcschaff
closed
2 months ago
0
Dan ss partitions
#1354
danv61
closed
2 months ago
0
Parameter Estimation Results in Login Request
#1353
AvocadoMoon
opened
2 months ago
0
N5 Export Storage Consumption
#1352
AvocadoMoon
opened
2 months ago
0
Fix depricated GitHub actions
#1351
AvocadoMoon
closed
2 months ago
0
Sim control test 2
#1350
AvocadoMoon
closed
1 month ago
0
Dan ss new - importing from springsalad
#1349
danv61
closed
2 months ago
0
Updating cicd for cli
#1348
CodeByDrescher
opened
2 months ago
0
Allowed multiple master sedml
#1347
CodeByDrescher
closed
2 months ago
0
Initialize site attributes to meaningful values
#1346
danv61
closed
2 months ago
1
allow URI or Path refs in SedML, add MathML xor support
#1345
jcschaff
closed
2 months ago
0
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