Story: VCell Server Serve N5 Data - Githubissues

virtualcell / vcell

Virtual Cell Framework

http://vcell.org/

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Story: VCell Server Serve N5 Data #1071

Closed AvocadoMoon closed 5 months ago

AvocadoMoon commented 7 months ago

Being able to take simulation data, convert it to N5 data format, and serve it to clients remotely.

Requirements

Take simulation data stored in VCell's servers and convert to N5 data on a users request
Have that data hosted at an endpoint which uses an API that is widely adopted

Tasks

[x] #980
[x] #1000
[x] #949
[x] #990
[x] #983
[x] Make folders for each user at the S3 endpoint storage, and then put the resulting simulation storage in there.
[x] https://github.com/virtualcell/vcell/pull/1081
[x] Better naming scheme for exported N5 files that include human readable metadata

Production Tasks

[x] #1116

Future

984

AvocadoMoon commented 7 months ago

Methods currently used by other code to export membranes:

JPG makes a thick membrane that is more for visual than analytical.
Post processing tab has its own rules for what can be exported from it.

AvocadoMoon commented 7 months ago

Change interface to variable in docker-compose-small.