virtualcell / vcell

Virtual Cell Framework
http://vcell.org/
Other
65 stars 20 forks source link

Expand HDF5 file export to accomodate multiple stochastic runs #148

Open ACowan0105 opened 2 years ago

ACowan0105 commented 2 years ago

Left over from Frank HDF5 export project

jcschaff commented 8 months ago

@ACowan0105 is this related to the histogram/statistics accumulated over many trials or to bundle 100s or 1000s of trial trajectories into a single HDF5 file?

ACowan0105 commented 7 months ago

Jim,

Sorry to be slow I bundle emails from Github and haven't looked in a while. I honestly am not sure what this was for - I think I was just the secretary at the meeting for this. I would ask Micheal or Ion, who I have cc'd here.

I will also try to figure out how to respond to these Github emails more eloquently in the future... Ann


Ann Cowan, Ph.D. Professor Emerita, Molecular Biology and Biophysics Richard D. Berlin Center for Cell Analysis and Modeling Cell And Genome Sciences Building MC6406 400 Farmington Avenue University of Connecticut School of Medicine Farmington, CT 06030-6406 Voice: 860-679-1449; Fax: 860-679-1039 E-mail: @.**@.> http://www.ccam.uchc.eduhttp://www.ccam.uchc.edu/ http://vcell.orghttp://vcell.org/


From: Jim Schaff @.> Sent: Friday, November 3, 2023 3:43 PM To: virtualcell/vcell @.> Cc: Cowan,Ann @.>; Mention @.> Subject: Re: [virtualcell/vcell] Expand HDF5 file export to accomodate multiple stochastic runs (Issue #148)

Attention: This is an external email. Use caution responding, opening attachments or clicking on links.

@ACowan0105https://urldefense.com/v3/__https://github.com/ACowan0105__;!!Cn_UX_p3!jWXXVWlggfphUU7HmV8vG4A6VGuujLzsADVSDSNubf5IlTV-tJeP-XSSkQAza0KgJwpE-51ca1xlT0C80vnJ1j0$ is this related to the histogram/statistics accumulated over many trials or to bundle 100s or 1000s of trial trajectories into a single HDF5 file?

— Reply to this email directly, view it on GitHubhttps://urldefense.com/v3/__https://github.com/virtualcell/vcell/issues/148*issuecomment-1793003996__;Iw!!Cn_UX_p3!jWXXVWlggfphUU7HmV8vG4A6VGuujLzsADVSDSNubf5IlTV-tJeP-XSSkQAza0KgJwpE-51ca1xlT0C8D-rTPRc$, or unsubscribehttps://urldefense.com/v3/__https://github.com/notifications/unsubscribe-auth/AMYDSYHJKEKI3REYKHTQXA3YCVCNTAVCNFSM5YDMUS22U5DIOJSWCZC7NNSXTN2JONZXKZKDN5WW2ZLOOQ5TCNZZGMYDAMZZHE3A__;!!Cn_UX_p3!jWXXVWlggfphUU7HmV8vG4A6VGuujLzsADVSDSNubf5IlTV-tJeP-XSSkQAza0KgJwpE-51ca1xlT0C8ISyhVyc$. You are receiving this because you were mentioned.Message ID: @.***>