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virtualcell / vcell

Virtual Cell Framework
http://vcell.org/
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fix swarm config #693

Closed jcschaff closed 1 year ago

jcschaff commented 1 year ago

fix swarm config. latest Alpha deploy is broken.

jcschaff commented 1 year ago

final refactoring so that all vcell services can be run locally from an IDE as:

  1. individual java services which can be debugged and use local postgres and mongo and remote activemq
    • slurm simulation jobs run and send status normally (via the remote activemqsim server running on vcell-node3)
    • slurm optimization jobs run normally (status will be sent through file system when it is resurrected).
  2. docker-compose (similar to swarm mode) running locally with local postgres - and both mongo and activemq running as containers within same stack). This doesn't receive status messages from slurm simulations
    • slurm simulation jobs run normally but don't send status (hpc cluster can't talk to local activemqsim running in stack on local dev machine)
    • slurm optimization jobs run normally (status will be sent through file system when it is resurrected).

For production: docker swarm mode will be tested on vcelltest site after merge.