Multiple stochastic runs are not displayed

virtualcell / vcell

Virtual Cell Framework

http://vcell.org/

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Multiple stochastic runs are not displayed #832

Open vcellmike opened 1 year ago

vcellmike commented 1 year ago

In release notes we say "Statistics displayed and exported for multiple trajectory stochastic simulations". In fact, we just run and display an average. The code was written by Frank and it stores average, min and max, deleting all intermediate simulation results. Need: display average, min, max and standard deviation. The quick fix to implement now:

Replace simulation results step view with continuous for multiple runs
Display in Plot legend "Average for 1000 simulations".

jcschaff commented 1 year ago

added a unit test in vcell-solvers for VCellStoch (the relevant solver for non-spatial stochastic) - see vcellstock-testing branch.