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virus-evolution
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gofasta
MIT License
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Add code skeleton to output sequence of new codon around mutated site
#50
mmokrejs
opened
8 months ago
1
Question: Does gofasta ignore SNPs in the first 16 nt of a sequence?
#49
mmokrejs
closed
8 months ago
1
Cleanup the output messages
#48
mmokrejs
opened
8 months ago
0
Accept gff3 file extension as well
#47
mmokrejs
opened
8 months ago
0
Accept --offset argument to adjust the nuc/aa positions
#46
mmokrejs
opened
8 months ago
2
--reference sometimes accepts filename and sometimes chrID
#45
mmokrejs
opened
8 months ago
2
Unsupported chars in reference id? and accepting GFF3 filename extension
#44
mmokrejs
opened
8 months ago
3
Dev
#43
benjamincjackson
closed
1 year ago
0
Dev
#42
benjamincjackson
closed
1 year ago
0
panic: runtime error: index out of range [29899] with length 29899
#41
Xiang-Leo
opened
1 year ago
7
Dev
#40
benjamincjackson
closed
1 year ago
0
Dev
#39
benjamincjackson
closed
1 year ago
0
Error: empty fasta file
#38
Jinke233
opened
1 year ago
1
annotation features from reverse strand
#37
fifthguy
opened
2 years ago
7
Updates help messages
#36
benjamincjackson
closed
2 years ago
0
Dev
#35
benjamincjackson
closed
2 years ago
0
Dev
#34
benjamincjackson
closed
2 years ago
0
adds a testing workflow
#33
benjamincjackson
closed
2 years ago
0
How does closest measure IUPAC codes?
#32
tseemann
closed
2 years ago
1
Support for max-dist in 'closest' command
#31
tseemann
opened
2 years ago
3
Better error message for variants
#30
benjamincjackson
closed
2 years ago
0
Dev
#29
benjamincjackson
closed
2 years ago
0
Mutation missing from output
#28
mattdmem
closed
2 years ago
5
no idea...
#27
benjamincjackson
closed
2 years ago
0
changes module name
#26
benjamincjackson
closed
2 years ago
0
Dev
#25
benjamincjackson
closed
2 years ago
0
Dev
#24
benjamincjackson
closed
2 years ago
0
extend genbank parsing / mutation annotation to protein products
#23
benjamincjackson
closed
2 years ago
3
Handle I/O errors gracefully
#22
benjamincjackson
closed
1 year ago
0
possible bug in gofasta sam toMultiAlign
#21
rmcolq
closed
2 years ago
8
What should the coordinate system be for sam indels?
#20
benjamincjackson
closed
2 years ago
0
node distances for updown
#19
benjamincjackson
closed
1 year ago
2
Updown distance
#18
benjamincjackson
closed
3 years ago
0
sam indels doesn't read from stdin
#17
benjamincjackson
closed
2 years ago
0
consolidate fastaio functions
#16
benjamincjackson
closed
1 year ago
0
updown --reference flag help inaccurate
#15
benjamincjackson
closed
3 years ago
0
skip secondary mappings in sam indels
#14
benjamincjackson
closed
2 years ago
0
Dev
#13
benjamincjackson
closed
3 years ago
0
increase the test coverage
#12
benjamincjackson
closed
1 year ago
0
external licences in the binary
#11
benjamincjackson
closed
3 years ago
1
Closest
#10
benjamincjackson
closed
3 years ago
0
gofasta snps -> open : no such file or directory
#9
tseemann
closed
3 years ago
2
Dev
#8
benjamincjackson
closed
3 years ago
0
Dev
#7
benjamincjackson
closed
3 years ago
0
Dev
#6
benjamincjackson
closed
3 years ago
0
What are the flags for sam toMultiAlign
#5
josephhughes
closed
3 years ago
1
Variants
#4
benjamincjackson
closed
3 years ago
0
tidies up command line options
#3
benjamincjackson
closed
3 years ago
0
Stdin
#2
benjamincjackson
closed
3 years ago
0
Sam
#1
benjamincjackson
closed
3 years ago
0
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