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virus-evolution / phylopipe

Pipeline to build a massive tree from global data
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Is pillar_2 deprecated? #15

Closed mattloose closed 3 years ago

mattloose commented 3 years ago

The column "pillar_2" is N/A for for metadata in /cephfs/covid/bham/results/phylogenetics/latest/beta/metadata

is this an intentional change?

mattloose commented 3 years ago

The last date that field was populated was 26th May (by the look of it).

rmcolq commented 3 years ago

There is now an 'is_pillar_2' field which has y/n bringing this bool column inline with the majora ones.

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The last date that field was populated was 26th May (by the look of it).

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mattloose commented 3 years ago

Ah - where is that? I can only find pillar_2 in the files here - /cephfs/covid/bham/results/phylogenetics/latest/beta/metadata

rmcolq commented 3 years ago

Oops, will fix tomorrow - was changed in datapipe and not pulled through to phylopipe...

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Ah - where is that? I can only find pillar_2 in the files here - /cephfs/covid/bham/results/phylogenetics/latest/beta/metadata

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mattloose commented 3 years ago

Thank you :-)